Literature DB >> 11476635

A mitogenomic perspective on the basal teleostean phylogeny: resolving higher-level relationships with longer DNA sequences.

J G Inoue1, M Miya, K Tsukamoto, M Nishida.   

Abstract

A recent study demonstrated that mitochondrial genomic (mitogenomic) data comprising nucleotide sequences from the concatenated protein-coding (no 3rd codon positions) plus transfer RNA (stem regions only) genes reproduced the expected phylogeny of teleosts with high statistical support. We reexamined the interrelationships of the five major, basal teleostean lineages (Osteoglossomorpha, Elopomorpha, Clupeomorpha, Ostariophysi, and Protacanthopterygii; given various rankings) using mitogenomic data for which five alternative phylogenetic hypotheses have been previously proposed on the basis of both morphological and molecular analyses. In addition to previously determined complete mitochondrial DNA (mtDNA) sequences from eight basal teleosts and two outgroups, we determined the complete mtDNA sequences (excluding a portion of the control region) for two, purposefully chosen species of Osteoglossomorpha (Osteoglossum bicirrhosum and Pantodon buchholzi), and the data were subjected to maximumparsimony and maximum-likelihood analyses. The resultant tree topologies from the two methods were congruent, although they differed from any of the previously proposed hypotheses. Furthermore, the mitogenomic data confidently rejected all of these hypotheses with high statistical significance. Copyright 2001 Academic Press.

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Year:  2001        PMID: 11476635     DOI: 10.1006/mpev.2001.0970

Source DB:  PubMed          Journal:  Mol Phylogenet Evol        ISSN: 1055-7903            Impact factor:   4.286


  27 in total

1.  OGRe: a relational database for comparative analysis of mitochondrial genomes.

Authors:  Daniel Jameson; Andrew P Gibson; Cendrine Hudelot; Paul G Higgs
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

2.  Gene rearrangements and evolution of tRNA pseudogenes in the mitochondrial genome of the parrotfish (Teleostei: Perciformes: Scaridae).

Authors:  Kohji Mabuchi; Masaki Miya; Takashi P Satoh; Mark W Westneat; Mutsumi Nishida
Journal:  J Mol Evol       Date:  2004-09       Impact factor: 2.395

3.  Mitogenomic evolution and interrelationships of the Cypriniformes (Actinopterygii: Ostariophysi): the first evidence toward resolution of higher-level relationships of the world's largest freshwater fish clade based on 59 whole mitogenome sequences.

Authors:  K Saitoh; T Sado; R L Mayden; N Hanzawa; K Nakamura; M Nishida; M Miya
Journal:  J Mol Evol       Date:  2006-11-02       Impact factor: 2.395

4.  Molecular evolution of cytochrome c oxidase in high-performance fish (teleostei: Scombroidei).

Authors:  Anne C Dalziel; Christopher D Moyes; Emma Fredriksson; Stephen C Lougheed
Journal:  J Mol Evol       Date:  2006-02-13       Impact factor: 2.395

5.  Phylogenetic timing of the fish-specific genome duplication correlates with the diversification of teleost fish.

Authors:  Simone Hoegg; Henner Brinkmann; John S Taylor; Axel Meyer
Journal:  J Mol Evol       Date:  2004-08       Impact factor: 2.395

6.  Resolution of ray-finned fish phylogeny and timing of diversification.

Authors:  Thomas J Near; Ron I Eytan; Alex Dornburg; Kristen L Kuhn; Jon A Moore; Matthew P Davis; Peter C Wainwright; Matt Friedman; W Leo Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-06       Impact factor: 11.205

7.  Intraspecific phylogeographic genomics from multiple complete mtDNA genomes in Atlantic cod (Gadus morhua): origins of the "codmother," transatlantic vicariance and midglacial population expansion.

Authors:  Steven M Carr; H Dawn Marshall
Journal:  Genetics       Date:  2008-08-20       Impact factor: 4.562

8.  Evolution of dimorphisms of the proteasome subunit beta type 8 gene (PSMB8) in basal ray-finned fish.

Authors:  Megumi Noro; Masaru Nonaka
Journal:  Immunogenetics       Date:  2014-03-13       Impact factor: 2.846

9.  Evolutionary Modifications Are Moderate in the Astroglial System of Actinopterygii as Revealed by GFAP Immunohistochemistry.

Authors:  Mihály Kálmán; Vanessza Matuz; Olivér M Sebők; Dávid Lőrincz
Journal:  Front Neuroanat       Date:  2021-06-29       Impact factor: 3.856

10.  Multi-locus phylogenetic analysis reveals the pattern and tempo of bony fish evolution.

Authors:  Richard E Broughton; Ricardo Betancur-R; Chenhong Li; Gloria Arratia; Guillermo Ortí
Journal:  PLoS Curr       Date:  2013-04-16
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