Literature DB >> 11472963

Identification of nucleotide sequences for the specific and rapid detection of Yersinia pestis.

L Radnedge1, S Gamez-Chin, P M McCready, P L Worsham, G L Andersen.   

Abstract

Suppression subtractive hybridization, a cost-effective approach for targeting unique DNA, was used to identify a 41.7-kb Yersinia pestis-specific region. One primer pair designed from this region amplified PCR products from natural isolates of Y. pestis and produced no false positives for near neighbors, an important criterion for unambiguous bacterial identification.

Entities:  

Mesh：

Substances：

Year:  2001        PMID： 11472963      PMCID： PMC93087          DOI： 10.1128/AEM.67.8.3759-3762.2001

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  15 in total

1.  Magnetic, microplate-format plasmid isolation protocol for high-yield, sequencing-grade DNA.

Authors:  E W Skowronski; N Armstrong; G Andersen; M Macht; P M McCready
Journal:  Biotechniques       Date:  2000-10       Impact factor: 1.993

2.  The 102-kilobase pgm locus of Yersinia pestis: sequence analysis and comparison of selected regions among different Yersinia pestis and Yersinia pseudotuberculosis strains.

Authors:  C Buchrieser; C Rusniok; L Frangeul; E Couve; A Billault; F Kunst; E Carniel; P Glaser
Journal:  Infect Immun       Date:  1999-09       Impact factor: 3.441

3.  Sequencing of two Yersinia pestis IS elements, IS285 and IS100.

Authors:  A A Filippov; P V Oleinikov; V L Motin; O A Protsenko; G B Smirnov
Journal:  Contrib Microbiol Immunol       Date:  1995

4.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors:  B Ewing; L Hillier; M C Wendl; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

5.  Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries.

Authors:  L Diatchenko; Y F Lau; A P Campbell; A Chenchik; F Moqadam; B Huang; S Lukyanov; K Lukyanov; N Gurskaya; E D Sverdlov; P D Siebert
Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-11       Impact factor: 11.205

Review 6.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

7.  Plasmid content in Yersinia pestis strains of different origin.

Authors:  A A Filippov; N S Solodovnikov; L M Kookleva; O A Protsenko
Journal:  FEMS Microbiol Lett       Date:  1990-01-15       Impact factor: 2.742

8.  Genome sequence of enterohaemorrhagic Escherichia coli O157:H7.

Authors:  N T Perna; G Plunkett; V Burland; B Mau; J D Glasner; D J Rose; G F Mayhew; P S Evans; J Gregor; H A Kirkpatrick; G Pósfai; J Hackett; S Klink; A Boutin; Y Shao; L Miller; E J Grotbeck; N W Davis; A Lim; E T Dimalanta; K D Potamousis; J Apodaca; T S Anantharaman; J Lin; G Yen; D C Schwartz; R A Welch; F R Blattner
Journal:  Nature       Date:  2001-01-25       Impact factor: 49.962

9.  Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis.

Authors:  M Achtman; K Zurth; G Morelli; G Torrea; A Guiyoule; E Carniel
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

10.  Molecular characterization of IS1541 insertions in the genome of Yersinia pestis.

Authors:  M Odaert; A Devalckenaere; P Trieu-Cuot; M Simonet
Journal:  J Bacteriol       Date:  1998-01       Impact factor: 3.490
View more
  19 in total

1.  Whole-Genome Sequencing in Microbial Forensic Analysis of Gamma-Irradiated Microbial Materials.

Authors:  Stacey M Broomall; Mohamed Ait Ichou; Michael D Krepps; Lauren A Johnsky; Mark A Karavis; Kyle S Hubbard; Joseph M Insalaco; Janet L Betters; Brady W Redmond; Bryan A Rivers; Alvin T Liem; Jessica M Hill; Edward T Fochler; Pierce A Roth; C Nicole Rosenzweig; Evan W Skowronski; Henry S Gibbons
Journal:  Appl Environ Microbiol       Date:  2015-11-13       Impact factor: 4.792

Review 2.  Suppression Subtractive Hybridization Versus Next-Generation Sequencing in Plant Genetic Engineering: Challenges and Perspectives.

Authors:  Mahbod Sahebi; Mohamed M Hanafi; Parisa Azizi; Abdul Hakim; Sadegh Ashkani; Rambod Abiri
Journal:  Mol Biotechnol       Date:  2015-10       Impact factor: 2.695

3.  Rapid polymerase chain reaction-based screening assay for bacterial biothreat agents.

Authors:  Samuel Yang; Richard E Rothman; Justin Hardick; Marcos Kuroki; Andrew Hardick; Vishal Doshi; Padmini Ramachandran; Charlotte A Gaydos
Journal:  Acad Emerg Med       Date:  2008-04       Impact factor: 3.451

Review 4.  Intraspecific diversity of Yersinia pestis.

Authors:  Andrey P Anisimov; Luther E Lindler; Gerald B Pier
Journal:  Clin Microbiol Rev       Date:  2004-04       Impact factor: 26.132

5.  Genome differences that distinguish Bacillus anthracis from Bacillus cereus and Bacillus thuringiensis.

Authors:  Lyndsay Radnedge; Peter G Agron; Karen K Hill; Paul J Jackson; Lawrence O Ticknor; Paul Keim; Gary L Andersen
Journal:  Appl Environ Microbiol       Date:  2003-05       Impact factor: 4.792

6.  Ambient stable quantitative PCR reagents for the detection of Yersinia pestis.

Authors:  Shi Qu; Qinghai Shi; Lei Zhou; Zhaobiao Guo; Dongsheng Zhou; Junhui Zhai; Ruifu Yang
Journal:  PLoS Negl Trop Dis       Date:  2010-03-09

7.  Testing and validation of high density resequencing microarray for broad range biothreat agents detection.

Authors:  Tomasz A Leski; Baochuan Lin; Anthony P Malanoski; Zheng Wang; Nina C Long; Carolyn E Meador; Brian Barrows; Sofi Ibrahim; Justin P Hardick; Mohamed Aitichou; Joel M Schnur; Clark Tibbetts; David A Stenger
Journal:  PLoS One       Date:  2009-08-11       Impact factor: 3.240

8.  Rapid identification and typing of Yersinia pestis and other Yersinia species by matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry.

Authors:  Saravanan Ayyadurai; Christophe Flaudrops; Didier Raoult; Michel Drancourt
Journal:  BMC Microbiol       Date:  2010-11-12       Impact factor: 3.605

9.  Identification of a genetic marker of Helicobacter pylori strains involved in gastric extranodal marginal zone B cell lymphoma of the MALT-type.

Authors:  P Lehours; S Dupouy; B Bergey; A Ruskoné-Foumestraux; J C Delchier; R Rad; F Richy; J Tankovic; F Zerbib; F Mégraud; A Ménard
Journal:  Gut       Date:  2004-07       Impact factor: 23.059

10.  Genetic classification of severe early childhood caries by use of subtracted DNA fragments from Streptococcus mutans.

Authors:  Deepak Saxena; Page W Caufield; Yihong Li; Stuart Brown; Jinmei Song; Robert Norman
Journal:  J Clin Microbiol       Date:  2008-07-02       Impact factor: 5.948
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.