Literature DB >> 11470599

High-throughput docking for lead generation.

R Abagyan1, M Totrov.   

Abstract

Recent improvements in flexible docking technology may lead to a bigger role for computational methods in lead discovery. Although fast and accurate computational prediction of binding affinities for an arbitrary molecule is still beyond the limits of current methods, the docking and screening procedures can select small sets of likely lead candidates from large libraries of either commercially or synthetically available compounds.

Mesh:

Year:  2001        PMID: 11470599     DOI: 10.1016/s1367-5931(00)00217-9

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  64 in total

1.  Accelerating electrostatic surface potential calculation with multi-scale approximation on graphics processing units.

Authors:  Ramu Anandakrishnan; Tom R W Scogland; Andrew T Fenley; John C Gordon; Wu-chun Feng; Alexey V Onufriev
Journal:  J Mol Graph Model       Date:  2010-06       Impact factor: 2.518

2.  Flexible docking under pharmacophore type constraints.

Authors:  Sally A Hindle; Matthias Rarey; Christian Buning; Thomas Lengaue
Journal:  J Comput Aided Mol Des       Date:  2002-02       Impact factor: 3.686

3.  Making virtual screening a reality.

Authors:  John T Koh
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-02       Impact factor: 11.205

Review 4.  A review of protein-small molecule docking methods.

Authors:  R D Taylor; P J Jewsbury; J W Essex
Journal:  J Comput Aided Mol Des       Date:  2002-03       Impact factor: 3.686

5.  Identifying the binding mode of a molecular scaffold.

Authors:  Doron Chema; Doron Eren; Avner Yayon; Amiram Goldblum; Andrea Zaliani
Journal:  J Comput Aided Mol Des       Date:  2004-01       Impact factor: 3.686

6.  Importance of accurate charges in molecular docking: quantum mechanical/molecular mechanical (QM/MM) approach.

Authors:  Art E Cho; Victor Guallar; Bruce J Berne; Richard Friesner
Journal:  J Comput Chem       Date:  2005-07-15       Impact factor: 3.376

7.  Decoys for docking.

Authors:  Alan P Graves; Ruth Brenk; Brian K Shoichet
Journal:  J Med Chem       Date:  2005-06-02       Impact factor: 7.446

8.  Design of ligand binding to an engineered protein cavity using virtual screening and thermal up-shift evaluation.

Authors:  Claudia Machicado; Jon López-Llano; Santiago Cuesta-López; Marta Bueno; Javier Sancho
Journal:  J Comput Aided Mol Des       Date:  2005-06       Impact factor: 3.686

9.  Ultrafast de novo docking combining pharmacophores and combinatorics.

Authors:  Marcus Gastreich; Markus Lilienthal; Hans Briem; Holger Claussen
Journal:  J Comput Aided Mol Des       Date:  2007-01-30       Impact factor: 3.686

10.  A combined ligand-based and target-based drug design approach for G-protein coupled receptors: application to salvinorin A, a selective kappa opioid receptor agonist.

Authors:  Nidhi Singh; Gwénaël Chevé; David M Ferguson; Christopher R McCurdy
Journal:  J Comput Aided Mol Des       Date:  2006-09-29       Impact factor: 3.686

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.