Literature DB >> 11470270

Translational selection shapes codon usage in the GC-rich genome of Chlamydomonas reinhardtii.

H Naya1, H Romero, N Carels, A Zavala, H Musto.   

Abstract

In unicellular species codon usage is determined by mutational biases and natural selection. Among prokaryotes, the influence of these factors is different if the genome is skewed towards AT or GC, since in AT-rich organisms translational selection is absent. On the other hand, in AT-rich unicellular eukaryotes the two factors are present. In order to understand if GC-rich genomes display a similar behavior, the case of Chlamydomonas reinhardtii was studied. Since we found that translational selection strongly influences codon usage in this species, we conclude that there is not a common pattern among unicellular organisms.

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Year:  2001        PMID: 11470270     DOI: 10.1016/s0014-5793(01)02644-8

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  30 in total

1.  Plus and minus sexual agglutinins from Chlamydomonas reinhardtii.

Authors:  Patrick J Ferris; Sabine Waffenschmidt; James G Umen; Huawen Lin; Jae-Hyeok Lee; Koichi Ishida; Takeaki Kubo; Jeffrey Lau; Ursula W Goodenough
Journal:  Plant Cell       Date:  2005-01-19       Impact factor: 11.277

2.  Evolutionary rates and expression level in Chlamydomonas.

Authors:  Cristina E Popescu; Tudor Borza; Joseph P Bielawski; Robert W Lee
Journal:  Genetics       Date:  2005-12-15       Impact factor: 4.562

3.  Codon usage analysis of photolyase encoding genes of cyanobacteria inhabiting diverse habitats.

Authors:  Jainendra Pathak; Vinod K Kannaujiya; Shailendra P Singh; Rajeshwar P Sinha
Journal:  3 Biotech       Date:  2017-06-29       Impact factor: 2.406

4.  Comparative analysis of expressed sequences reveals a conserved pattern of optimal codon usage in plants.

Authors:  Liangjiang Wang; Marilyn J Roossinck
Journal:  Plant Mol Biol       Date:  2006-07       Impact factor: 4.076

5.  Proteome composition in Plasmodium falciparum: higher usage of GC-rich nonsynonymous codons in highly expressed genes.

Authors:  Ipsita Chanda; Archana Pan; Chitra Dutta
Journal:  J Mol Evol       Date:  2005-07-21       Impact factor: 2.395

6.  Genome-based examination of chlorophyll and carotenoid biosynthesis in Chlamydomonas reinhardtii.

Authors:  Martin Lohr; Chung-Soon Im; Arthur R Grossman
Journal:  Plant Physiol       Date:  2005-04-22       Impact factor: 8.340

7.  Comparative study on factors influencing the codon and amino acid usage in Lactobacillus sakei 23K and 13 other lactobacilli.

Authors:  Kinshuk Chandra Nayak
Journal:  Mol Biol Rep       Date:  2011-05-07       Impact factor: 2.316

8.  Comparative studies on codon usage pattern of chloroplasts and their host nuclear genes in four plant species.

Authors:  Qingpo Liu; Qingzhong Xue
Journal:  J Genet       Date:  2005-04       Impact factor: 1.166

9.  Universal Features for the Classification of Coding and Non-coding DNA Sequences.

Authors:  Nicolas Carels; Ramon Vidal; Diego Frías
Journal:  Bioinform Biol Insights       Date:  2009-06-03

10.  Analysis of synonymous codon usage in Zea mays.

Authors:  Hanmei Liu; Rui He; Huaiyu Zhang; Yubi Huang; Mengliang Tian; Junjie Zhang
Journal:  Mol Biol Rep       Date:  2009-03-29       Impact factor: 2.316

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