Literature DB >> 11465037

Prediction and phylogenetic analysis of mammalian short interspersed elements (SINEs).

I B Rogozin1, V I Mayorov, M V Lavrentieva, L Milanesi, L R Adkison.   

Abstract

The presence of repetitive elements can create serious problems for sequence analysis, especially in the case of homology searches in nucleotide sequence databases. Repetitive elements should be treated carefully by using special programs and databases. In this paper, various aspects of SINE (short interspersed repetitive element) identification, analysis and evolution are discussed.

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Year:  2000        PMID： 11465037     DOI： 10.1093/bib/1.3.260

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN： 1467-5463            Impact factor:   11.622


  4 in total

1.  A late origin of the extant eukaryotic diversity: divergence time estimates using rare genomic changes.

Authors:  Diana Chernikova; Sam Motamedi; Miklós Csürös; Eugene V Koonin; Igor B Rogozin
Journal:  Biol Direct       Date:  2011-05-19       Impact factor: 4.540

2.  Evolutionary conservation suggests a regulatory function of AUG triplets in 5'-UTRs of eukaryotic genes.

Authors:  Alexander Churbanov; Igor B Rogozin; Vladimir N Babenko; Hesham Ali; Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2005-09-26       Impact factor: 16.971

3.  Transposable Element Insertions in Long Intergenic Non-Coding RNA Genes.

Authors:  Sivakumar Kannan; Diana Chernikova; Igor B Rogozin; Eugenia Poliakov; David Managadze; Eugene V Koonin; Luciano Milanesi
Journal:  Front Bioeng Biotechnol       Date:  2015-06-09

Review 4.  Epigenetic mechanisms in mammals.

Authors:  J K Kim; M Samaranayake; S Pradhan
Journal:  Cell Mol Life Sci       Date:  2009-02       Impact factor: 9.261
  4 in total

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