Literature DB >> 11459831

Down-regulation of TDT transcription in CD4(+)CD8(+) thymocytes by Ikaros proteins in direct competition with an Ets activator.

L A Trinh1, R Ferrini, B S Cobb, A S Weinmann, K Hahm, P Ernst, I P Garraway, M Merkenschlager, S T Smale.   

Abstract

Ikaros is a unique regulator of lymphopoiesis that associates with pericentromeric heterochromatin and has been implicated in heritable gene inactivation. Binding and competition experiments demonstrate that Ikaros dimers compete with an Ets activator for occupancy of the lymphocyte-specific TdT promoter. Mutations that selectively disrupt Ikaros binding to an integrated TdT promoter had no effect on promoter function in a CD4(+)CD8(+) thymocyte line. However, these mutations abolished down-regulation on differentiation, providing evidence that Ikaros plays a direct role in repression. Reduced access to restriction enzyme cleavage suggested that chromatin alterations accompany down-regulation. The Ikaros-dependent down-regulation event and the observed chromatin alterations appear to precede pericentromeric repositioning. Current models propose that the functions of Ikaros should be disrupted by a small isoform that retains the dimerization domain and lacks the DNA-binding domain. Surprisingly, in the CD4(+)CD8(+) thymocyte line, overexpression of a small Ikaros isoform had no effect on differentiation or on the pericentromeric targeting and DNA-binding properties of Ikaros. Rather, the small isoform assembled into multimeric complexes with DNA-bound Ikaros at the pericentromeric foci. The capacity for in vivo multimer formation suggests that interactions between Ikaros dimers bound to the TdT promoter and those bound to pericentromeric repeat sequences may contribute to the pericentromeric repositioning of the inactive gene.

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Year:  2001        PMID: 11459831      PMCID: PMC312741          DOI: 10.1101/gad.905601

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  29 in total

1.  Rapid and selective remodeling of a positioned nucleosome during the induction of IL-12 p40 transcription.

Authors:  A S Weinmann; S E Plevy; S T Smale
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Review 2.  Mechanisms of transcriptional regulation in lymphocyte progenitors: insight from an analysis of the terminal transferase promoter.

Authors:  P Ernst; K Hahm; B S Cobb; K E Brown; L A Trinh; A S McCarty; M Merkenschlager; C A Klug; A G Fisher; S T Smale
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1999

3.  Targeting of Ikaros to pericentromeric heterochromatin by direct DNA binding.

Authors:  B S Cobb; S Morales-Alcelay; G Kleiger; K E Brown; A G Fisher; S T Smale
Journal:  Genes Dev       Date:  2000-09-01       Impact factor: 11.361

4.  A functional enhancer suppresses silencing of a transgene and prevents its localization close to centrometric heterochromatin.

Authors:  C Francastel; M C Walters; M Groudine; D I Martin
Journal:  Cell       Date:  1999-10-29       Impact factor: 41.582

5.  Advanced mammalian gene transfer: high titre retroviral vectors with multiple drug selection markers and a complementary helper-free packaging cell line.

Authors:  J P Morgenstern; H Land
Journal:  Nucleic Acids Res       Date:  1990-06-25       Impact factor: 16.971

6.  The "initiator" as a transcription control element.

Authors:  S T Smale; D Baltimore
Journal:  Cell       Date:  1989-04-07       Impact factor: 41.582

7.  Nucleosome remodeling at the IL-12 p40 promoter is a TLR-dependent, Rel-independent event.

Authors:  A S Weinmann; D M Mitchell; S Sanjabi; M N Bradley; A Hoffmann; H C Liou; S T Smale
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8.  Two dominant-acting selectable markers for gene transfer studies in mammalian cells.

Authors:  S C Hartman; R C Mulligan
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9.  An ikaros-containing chromatin-remodeling complex in adult-type erythroid cells.

Authors:  D W O'Neill; S S Schoetz; R A Lopez; M Castle; L Rabinowitz; E Shor; D Krawchuk; M G Goll; M Renz; H P Seelig; S Han; R H Seong; S D Park; T Agalioti; N Munshi; D Thanos; H Erdjument-Bromage; P Tempst; A Bank
Journal:  Mol Cell Biol       Date:  2000-10       Impact factor: 4.272

10.  LyF-1, a transcriptional regulator that interacts with a novel class of promoters for lymphocyte-specific genes.

Authors:  K Lo; N R Landau; S T Smale
Journal:  Mol Cell Biol       Date:  1991-10       Impact factor: 4.272

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  36 in total

1.  A common mechanism for mitotic inactivation of C2H2 zinc finger DNA-binding domains.

Authors:  Sinisa Dovat; Tapani Ronni; Dana Russell; Roger Ferrini; Bradley S Cobb; Stephen T Smale
Journal:  Genes Dev       Date:  2002-12-01       Impact factor: 11.361

2.  Mast cell IL-4 expression is regulated by Ikaros and influences encephalitogenic Th1 responses in EAE.

Authors:  Gregory D Gregory; Shveta S Raju; Susan Winandy; Melissa A Brown
Journal:  J Clin Invest       Date:  2006-04-20       Impact factor: 14.808

Review 3.  Clinical consequences of defects in B-cell development.

Authors:  Andre M Vale; Harry W Schroeder
Journal:  J Allergy Clin Immunol       Date:  2010-04       Impact factor: 10.793

Review 4.  The end adjusts the means: heterochromatin remodelling during terminal cell differentiation.

Authors:  Sergei A Grigoryev; Yaroslava A Bulynko; Evgenya Y Popova
Journal:  Chromosome Res       Date:  2006       Impact factor: 5.239

Review 5.  Ikaros, CK2 kinase, and the road to leukemia.

Authors:  Sinisa Dovat; Chunhua Song; Kimberly J Payne; Zhanjun Li
Journal:  Mol Cell Biochem       Date:  2011-07-13       Impact factor: 3.396

Review 6.  Something silent this way forms: the functional organization of the repressive nuclear compartment.

Authors:  Joan C Ritland Politz; David Scalzo; Mark Groudine
Journal:  Annu Rev Cell Dev Biol       Date:  2013-07-05       Impact factor: 13.827

7.  Ikaros in B cell development and function.

Authors:  Maclean Sellars; Philippe Kastner; Susan Chan
Journal:  World J Biol Chem       Date:  2011-06-26

8.  Ikaros promotes early-born neuronal fates in the cerebral cortex.

Authors:  Jessica M Alsiö; Basile Tarchini; Michel Cayouette; Frederick J Livesey
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-04       Impact factor: 11.205

9.  Transcriptional Regulation of JARID1B/KDM5B Histone Demethylase by Ikaros, Histone Deacetylase 1 (HDAC1), and Casein Kinase 2 (CK2) in B-cell Acute Lymphoblastic Leukemia.

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Journal:  J Biol Chem       Date:  2015-12-10       Impact factor: 5.157

10.  Ikaros controls isotype selection during immunoglobulin class switch recombination.

Authors:  MacLean Sellars; Bernardo Reina-San-Martin; Philippe Kastner; Susan Chan
Journal:  J Exp Med       Date:  2009-05-04       Impact factor: 14.307

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