Literature DB >> 11457153

Electron affinities of the DNA and RNA bases.

S S Wesolowski1, M L Leininger, P N Pentchev, H F Schaefer.   

Abstract

Adiabatic electron affinities (AEAs) for the DNA and RNA bases are predicted by using a range of density functionals with a double-zeta plus polarization plus diffuse (DZP++) basis set in an effort to bracket the true EAs. Although the AEAs exhibit moderate fluctuations with respect to the choice of functional, systematic trends show that the covalent uracil (U) and thymine (T) anions are bound by 0.05-0.25 eV while the adenine (A) anion is clearly unbound. The computed AEAs for cytosine (C) and guanine (G) oscillate between small positive and negative values for the three most reliable functional combinations (BP86, B3LYP, and BLYP), and it remains unclear if either covalent anion is bound. AEAs with B3LYP/TZ2P++ single points are 0.19 (U), 0.16 (T), 0.07 (G), -0.02 (C), and -0.17 eV (A). Favorable comparisons are made to experimental estimates extrapolated from photoelectron spectra data for the complexes of the nucleobases with water. However, experimental values scaled from liquid-phase reduction potentials are shown to overestimate the AEAs by as much as 1.5 eV. Because the uracil and thymine covalent EAs are in energy ranges near those of their dipole-bound counterparts, preparation and precise experimental measurement of the thermodynamically stable covalent anions may prove challenging.

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Year:  2001        PMID: 11457153     DOI: 10.1021/ja003814o

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  13 in total

1.  Electronic transport in DNA.

Authors:  Daphne Klotsa; Rudolf A Römer; Matthew S Turner
Journal:  Biophys J       Date:  2005-07-22       Impact factor: 4.033

2.  Solvation free energies of molecules. The most stable anionic tautomers of uracil.

Authors:  Maciej Haranczyk; Maciej Gutowski; Arieh Warshel
Journal:  Phys Chem Chem Phys       Date:  2008-06-11       Impact factor: 3.676

3.  (G-H)*-C and G-(C-H)* radicals derived from the guanine.cytosine base pair cause DNA subunit lesions.

Authors:  Partha Pratim Bera; Henry F Schaefer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-06       Impact factor: 11.205

4.  The deprotonated guanine-cytosine base pair.

Authors:  Maria C Lind; Partha P Bera; Nancy A Richardson; Steven E Wheeler; Henry F Schaefer
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-09       Impact factor: 11.205

5.  Photoelectron spectroscopic studies of 5-halouracil anions.

Authors:  Dunja Radisic; Yeon Jae Ko; John M Nilles; Sarah T Stokes; Michael D Sevilla; Janusz Rak; Kit H Bowen
Journal:  J Chem Phys       Date:  2011-01-07       Impact factor: 3.488

6.  DNA strand breaks induced by near-zero-electronvolt electron attachment to pyrimidine nucleotides.

Authors:  Xiaoguang Bao; Jing Wang; Jiande Gu; Jerzy Leszczynski
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-03       Impact factor: 11.205

Review 7.  Progress in ab initio QM/MM free-energy simulations of electrostatic energies in proteins: accelerated QM/MM studies of pKa, redox reactions and solvation free energies.

Authors:  Shina C L Kamerlin; Maciej Haranczyk; Arieh Warshel
Journal:  J Phys Chem B       Date:  2009-02-05       Impact factor: 2.991

8.  Electron attachment-induced DNA single-strand breaks at the pyrimidine sites.

Authors:  Jiande Gu; Jing Wang; Jerzy Leszczynski
Journal:  Nucleic Acids Res       Date:  2010-04-29       Impact factor: 16.971

9.  Probing the interactions of the solvated electron with DNA by molecular dynamics simulations: II. bromodeoxyuridine-thymidine mismatched DNA.

Authors:  Tsvetan G Gantchev; Darel J Hunting
Journal:  J Mol Model       Date:  2008-10-21       Impact factor: 1.810

10.  Bound anionic states of adenine.

Authors:  Maciej Harańczyk; Maciej Gutowski; Xiang Li; Kit H Bowen
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-12       Impact factor: 11.205

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