Literature DB >> 11456890

The first solution structure of a paramagnetic copper(II) protein: the case of oxidized plastocyanin from the cyanobacterium Synechocystis PCC6803.

I Bertini1, S Ciurli, A Dikiy, C O Fernàndez, C Luchinat, N Safarov, S Shumilin, A J Vila.   

Abstract

The NMR solution structure of oxidized plastocyanin from the cyanobacterium Synechocystis PCC6803 is here reported. The protein contains paramagnetic copper(II), whose electronic relaxation times are quite unfavorable for NMR solution studies. The structure has been solved on the basis of 1041 meaningful NOESY cross-peaks, 18 1D NOEs, 26 T(1) values, 96 dihedral angle constraints, and 18 H-bonds. The detection of broad hyperfine-shifted signals and their full assignment allowed the identification of the copper(II) ligands and the determination of the Cu-S-C-H dihedral angle for the coordinated cysteine. The global root-mean-square deviation from the mean structure for the solution structure family is 0.72 +/- 0.14 and 1.16 +/- 0.17 A for backbone and heavy atoms, respectively. The structure is overall quite satisfactory and represents a breakthrough, in that it includes paramagnetic copper proteins among the metalloproteins for which solution structures can be afforded. The comparison with the available X-ray structure of a triple mutant is also performed.

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Year:  2001        PMID: 11456890     DOI: 10.1021/ja0033685

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  9 in total

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Journal:  J Biomol NMR       Date:  2010-08-24       Impact factor: 2.835

2.  Changes in non-core regions stabilise plastocyanin from the thermophilic cyanobacterium Phormidium laminosum.

Authors:  Francisco J Muñoz-López; Simone Raugei; Miguel A De la Rosa; Antonio J Díaz-Quintana; Paolo Carloni
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3.  A Brownian dynamics study of the interaction of Phormidium cytochrome f with various cyanobacterial plastocyanins.

Authors:  Elizabeth L Gross; Irving Rosenberg
Journal:  Biophys J       Date:  2005-10-07       Impact factor: 4.033

4.  Cu(II)-Based Paramagnetic Probe to Study RNA-Protein Interactions by NMR.

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Journal:  Inorg Chem       Date:  2017-03-22       Impact factor: 5.165

Review 5.  Cupredoxins--a study of how proteins may evolve to use metals for bioenergetic processes.

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Journal:  Metallomics       Date:  2011-01-24       Impact factor: 4.526

6.  Determination of the geometric structure of the metal site in a blue copper protein by paramagnetic NMR.

Authors:  D Flemming Hansen; Jens J Led
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-30       Impact factor: 11.205

7.  Determining the structure and binding mechanism of oxytocin-Cu2+ complex using paramagnetic relaxation enhancement NMR analysis.

Authors:  Israel Alshanski; Deborah E Shalev; Shlomo Yitzchaik; Mattan Hurevich
Journal:  J Biol Inorg Chem       Date:  2021-08-30       Impact factor: 3.358

8.  Electronic structure of the ground and excited states of the Cu(A) site by NMR spectroscopy.

Authors:  Luciano A Abriata; Gabriela N Ledesma; Roberta Pierattelli; Alejandro J Vila
Journal:  J Am Chem Soc       Date:  2009-02-11       Impact factor: 15.419

9.  Accurate structure and dynamics of the metal-site of paramagnetic metalloproteins from NMR parameters using natural bond orbitals.

Authors:  D Flemming Hansen; William M Westler; Micha B A Kunze; John L Markley; Frank Weinhold; Jens J Led
Journal:  J Am Chem Soc       Date:  2012-03-06       Impact factor: 15.419

  9 in total

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