Literature DB >> 11441184

Human chromosome 19 and related regions in mouse: conservative and lineage-specific evolution.

P Dehal1, P Predki, A S Olsen, A Kobayashi, P Folta, S Lucas, M Land, A Terry, C L Ecale Zhou, S Rash, Q Zhang, L Gordon, J Kim, C Elkin, M J Pollard, P Richardson, D Rokhsar, E Uberbacher, T Hawkins, E Branscomb, L Stubbs.   

Abstract

To illuminate the function and evolutionary history of both genomes, we sequenced mouse DNA related to human chromosome 19. Comparative sequence alignments yielded confirmatory evidence for hypothetical genes and identified exons, regulatory elements, and candidate genes that were missed by other predictive methods. Chromosome-wide comparisons revealed a difference between single-copy HSA19 genes, which are overwhelmingly conserved in mouse, and genes residing in tandem familial clusters, which differ extensively in number, coding capacity, and organization between the two species. Finally, we sequenced breakpoints of all 15 evolutionary rearrangements, providing a view of the forces that drive chromosome evolution in mammals.

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Year:  2001        PMID: 11441184     DOI: 10.1126/science.1060310

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  67 in total

1.  The probability of preservation of a newly arisen gene duplicate.

Authors:  M Lynch; M O'Hely; B Walsh; A Force
Journal:  Genetics       Date:  2001-12       Impact factor: 4.562

2.  Generation and comparative analysis of approximately 3.3 Mb of mouse genomic sequence orthologous to the region of human chromosome 7q11.23 implicated in Williams syndrome.

Authors:  Udaya DeSilva; Laura Elnitski; Jacquelyn R Idol; Johannah L Doyle; Weiniu Gan; James W Thomas; Scott Schwartz; Nicole L Dietrich; Stephen M Beckstrom-Sternberg; Jennifer C McDowell; Robert W Blakesley; Gerard G Bouffard; Pamela J Thomas; Jeffrey W Touchman; Webb Miller; Eric D Green
Journal:  Genome Res       Date:  2002-01       Impact factor: 9.043

3.  Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome.

Authors:  Ge Liu; Shaying Zhao; Jeffrey A Bailey; S Cenk Sahinalp; Can Alkan; Eray Tuzun; Eric D Green; Evan E Eichler
Journal:  Genome Res       Date:  2003-03       Impact factor: 9.043

Review 4.  On the high value of low standards.

Authors:  Elbert Branscomb; Paul Predki
Journal:  J Bacteriol       Date:  2002-12       Impact factor: 3.490

5.  Comparative sequence analysis of a single-gene conserved segment in mouse and human.

Authors:  James W Thomas; Eric D Green
Journal:  Mamm Genome       Date:  2003-10       Impact factor: 2.957

6.  Gene structure prediction in syntenic DNA segments.

Authors:  Jonathan E Moore; James A Lake
Journal:  Nucleic Acids Res       Date:  2003-12-15       Impact factor: 16.971

7.  Identification and characterization of multi-species conserved sequences.

Authors:  Elliott H Margulies; Mathieu Blanchette; David Haussler; Eric D Green
Journal:  Genome Res       Date:  2003-12       Impact factor: 9.043

8.  Pericentromeric duplications in the laboratory mouse.

Authors:  James W Thomas; Mary G Schueler; Tyrone J Summers; Robert W Blakesley; Jennifer C McDowell; Pamela J Thomas; Jacquelyn R Idol; Valerie V B Maduro; Shih-Queen Lee-Lin; Jeffrey W Touchman; Gerard G Bouffard; Stephen M Beckstrom-Sternberg; Eric D Green
Journal:  Genome Res       Date:  2003-01       Impact factor: 9.043

Review 9.  Comparative genomic tools and databases: providing insights into the human genome.

Authors:  Len A Pennacchio; Edward M Rubin
Journal:  J Clin Invest       Date:  2003-04       Impact factor: 14.808

10.  Examination of sequence homology between human chromosome 20 and the mouse genome: intense conservation of many genomic elements.

Authors:  Lingxiang Zhu; Gary D Swergold; Michael F Seldin
Journal:  Hum Genet       Date:  2003-03-19       Impact factor: 4.132

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