Literature DB >> 11438728

Cytochrome c' folding triggered by electron transfer: fast and slow formation of four-helix bundles.

J C Lee1, H B Gray, J R Winkler.   

Abstract

Reduced (Fe(II)) Rhodopseudomonas palustris cytochrome c' (Cyt c') is more stable toward unfolding ([GuHCl](1/2) = 2.9(1) M) than the oxidized (Fe(III)) protein ([GuHCl](1/2) = 1.9(1) M). The difference in folding free energies (Delta Delta G(f) degrees = 70 meV) is less than half of the difference in reduction potentials of the folded protein (100 mV vs. NHE) and a free heme in aqueous solution ( approximately -150 mV). The spectroscopic features of unfolded Fe(II)-Cyt c' indicate a low-spin heme that is axially coordinated to methionine sulfur (Met-15 or Met-25). Time-resolved absorption measurements after CO photodissociation from unfolded Fe(II)(CO)-Cyt c' confirm that methionine can bind to the ferroheme on the microsecond time scale [k(obs) = 5(2) x 10(4) s(-1)]. Protein folding was initiated by photoreduction (two-photon laser excitation of NADH) of unfolded Fe(III)-Cyt c' ([GuHCl] = 2.02--2.54 M). Folding kinetics monitored by heme absorption span a wide time range and are highly heterogeneous; there are fast-folding ( approximately 10(3) s(-1)), intermediate-folding (10(2)-10(1) s(-1)), and slow-folding (10(-1) s(-1)) populations, with the last two likely containing methionine-ligated (Met-15 or Met-25) ferrohemes. Kinetics after photoreduction of unfolded Fe(III)-Cyt c' in the presence of CO are attributable to CO binding [1.4(6) x 10(3) s(-1)] and Fe(II)(CO)-Cyt c' folding [2.8(9) s(-1)] processes; stopped-flow triggered folding of Fe(III)-Cyt c' (which does not contain a protein-derived sixth ligand) is adequately described by a single kinetics phase with an estimated folding time constant of approximately 4 ms [Delta G(f) degrees = -33(3) kJ mol(-1)] at zero denaturant.

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Year:  2001        PMID: 11438728      PMCID: PMC35415          DOI: 10.1073/pnas.141235198

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

1.  Interpreting the folding kinetics of helical proteins.

Authors:  Y Zhou; M Karplus
Journal:  Nature       Date:  1999-09-23       Impact factor: 49.962

2.  A simple model for calculating the kinetics of protein folding from three-dimensional structures.

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3.  Folding of a model three-helix bundle protein: a thermodynamic and kinetic analysis.

Authors:  Y Zhou; M Karplus
Journal:  J Mol Biol       Date:  1999-11-05       Impact factor: 5.469

4.  Exploring the origins of topological frustration: design of a minimally frustrated model of fragment B of protein A.

Authors:  J E Shea; J N Onuchic; C L Brooks
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5.  The topomer-sampling model of protein folding.

Authors:  D A Debe; M J Carlson; W A Goddard
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

Review 6.  Deciphering the timescales and mechanisms of protein folding using minimal off-lattice models.

Authors:  D Thirumalai; D K Klimov
Journal:  Curr Opin Struct Biol       Date:  1999-04       Impact factor: 6.809

7.  ATYPICAL SOLUBLE HAEM PROTEINS FROM A STRAIN OF RHODOPSEUDOMONAS PALUSTRIS SP.

Authors:  H DEKLERK; R G BARTSCH; M D KAMEN
Journal:  Biochim Biophys Acta       Date:  1965-02-15

8.  Cytochrome b562 folding triggered by electron transfer: approaching the speed limit for formation of a four-helix-bundle protein.

Authors:  P Wittung-Stafshede; J C Lee; J R Winkler; H B Gray
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-08       Impact factor: 11.205

9.  Formation of hydrogen bonds precedes the rate-limiting formation of persistent structure in the folding of ACBP.

Authors:  K Teilum; B B Kragelund; J Knudsen; F M Poulsen
Journal:  J Mol Biol       Date:  2000-09-01       Impact factor: 5.469

10.  Measuring the rate of intramolecular contact formation in polypeptides.

Authors:  L J Lapidus; W A Eaton; J Hofrichter
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  9 in total

1.  Intrachain contact dynamics in unfolded cytochrome cb562.

Authors:  Nicole D Bouley Ford; Dong-Woo Shin; Harry B Gray; Jay R Winkler
Journal:  J Phys Chem B       Date:  2013-08-30       Impact factor: 2.991

2.  Site-specific collapse dynamics guide the formation of the cytochrome c' four-helix bundle.

Authors:  Tetsunari Kimura; Jennifer C Lee; Harry B Gray; Jay R Winkler
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-19       Impact factor: 11.205

3.  Probing the cytochrome c' folding landscape.

Authors:  Ekaterina V Pletneva; Ziqing Zhao; Tetsunari Kimura; Krastina V Petrova; Harry B Gray; Jay R Winkler
Journal:  J Inorg Biochem       Date:  2007-06-21       Impact factor: 4.155

4.  Folding energy landscape of cytochrome cb562.

Authors:  Tetsunari Kimura; Jennifer C Lee; Harry B Gray; Jay R Winkler
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-28       Impact factor: 11.205

5.  Structural features of cytochrome c' folding intermediates revealed by fluorescence energy-transfer kinetics.

Authors:  Jennifer C Lee; K Cecilia Engman; F Akif Tezcan; Harry B Gray; Jay R Winkler
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-29       Impact factor: 11.205

6.  Helical Propensity Affects the Conformational Properties of the Denatured State of Cytochrome c'.

Authors:  Travis A Danielson; Bruce E Bowler
Journal:  Biophys J       Date:  2018-01-23       Impact factor: 4.033

7.  Early events in the folding of four-helix-bundle heme proteins.

Authors:  Jasmin Faraone-Mennella; Harry B Gray; Jay R Winkler
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-20       Impact factor: 11.205

8.  Manifestations of native topology in the denatured state ensemble of Rhodopseudomonas palustris cytochrome c'.

Authors:  Tanveer A Dar; R Dustin Schaeffer; Valerie Daggett; Bruce E Bowler
Journal:  Biochemistry       Date:  2011-01-20       Impact factor: 3.162

9.  Thermodynamics of loop formation in the denatured state of rhodopseudomonas palustris cytochrome c': scaling exponents and the reconciliation problem.

Authors:  K Sudhindra Rao; Franco O Tzul; Arwen K Christian; Tia N Gordon; Bruce E Bowler
Journal:  J Mol Biol       Date:  2009-08-06       Impact factor: 5.469

  9 in total

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