Literature DB >> 11435394

Identifying functional elements by comparative DNA sequence analysis.

M Tompa1.   

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Year:  2001        PMID： 11435394     DOI： 10.1101/gr.197101

Source DB:  PubMed          Journal:  Genome Res        ISSN： 1088-9051            Impact factor:   9.043


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  15 in total

1.  Discovery of regulatory elements by a computational method for phylogenetic footprinting.

Authors:  Mathieu Blanchette; Martin Tompa
Journal:  Genome Res       Date:  2002-05       Impact factor: 9.043

2.  Evolutionary conservation of regulatory elements in vertebrate Hox gene clusters.

Authors:  Simona Santini; Jeffrey L Boore; Axel Meyer
Journal:  Genome Res       Date:  2003-06       Impact factor: 9.043

3.  CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting.

Authors:  Eugene Berezikov; Victor Guryev; Ronald H A Plasterk; Edwin Cuppen
Journal:  Genome Res       Date:  2003-12-12       Impact factor: 9.043

4.  Theatre: A software tool for detailed comparative analysis and visualization of genomic sequence.

Authors:  Yvonne J K Edwards; Tim J Carver; Tanya Vavouri; Martin Frith; Martin J Bishop; Greg Elgar
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

Review 5.  Computational approaches to identify promoters and cis-regulatory elements in plant genomes.

Authors:  Stephane Rombauts; Kobe Florquin; Magali Lescot; Kathleen Marchal; Pierre Rouzé; Yves van de Peer
Journal:  Plant Physiol       Date:  2003-07       Impact factor: 8.340

6.  Phylogenetic analysis of 5'-noncoding regions from the ABA-responsive rab16/17 gene family of sorghum, maize and rice provides insight into the composition, organization and function of cis-regulatory modules.

Authors:  Christina D Buchanan; Patricia E Klein; John E Mullet
Journal:  Genetics       Date:  2004-11       Impact factor: 4.562

7.  Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures.

Authors:  Alexander Stark; Michael F Lin; Pouya Kheradpour; Jakob S Pedersen; Leopold Parts; Joseph W Carlson; Madeline A Crosby; Matthew D Rasmussen; Sushmita Roy; Ameya N Deoras; J Graham Ruby; Julius Brennecke; Emily Hodges; Angie S Hinrichs; Anat Caspi; Benedict Paten; Seung-Won Park; Mira V Han; Morgan L Maeder; Benjamin J Polansky; Bryanne E Robson; Stein Aerts; Jacques van Helden; Bassem Hassan; Donald G Gilbert; Deborah A Eastman; Michael Rice; Michael Weir; Matthew W Hahn; Yongkyu Park; Colin N Dewey; Lior Pachter; W James Kent; David Haussler; Eric C Lai; David P Bartel; Gregory J Hannon; Thomas C Kaufman; Michael B Eisen; Andrew G Clark; Douglas Smith; Susan E Celniker; William M Gelbart; Manolis Kellis
Journal:  Nature       Date:  2007-11-08       Impact factor: 49.962

8.  Investigations into the membrane interactions of m-calpain domain V.

Authors:  Sarah R Dennison; Silvia Dante; Thomas Hauss; Klaus Brandenburg; Frederick Harris; David A Phoenix
Journal:  Biophys J       Date:  2005-01-14       Impact factor: 4.033

9.  The effect of orthology and coregulation on detecting regulatory motifs.

Authors:  Valerie Storms; Marleen Claeys; Aminael Sanchez; Bart De Moor; Annemieke Verstuyf; Kathleen Marchal
Journal:  PLoS One       Date:  2010-02-03       Impact factor: 3.240

10.  A transcriptional analysis of carotenoid, chlorophyll and plastidial isoprenoid biosynthesis genes during development and osmotic stress responses in Arabidopsis thaliana.

Authors:  Stuart Meier; Oren Tzfadia; Ratnakar Vallabhaneni; Chris Gehring; Eleanore T Wurtzel
Journal:  BMC Syst Biol       Date:  2011-05-19
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