Literature DB >> 11433361

The evolution of isochores.

A Eyre-Walker1, L D Hurst.   

Abstract

One of the most striking features of mammalian chromosomes is the variation in G+C content that occurs over scales of hundreds of kilobases to megabases, the so-called 'isochore' structure of the human genome. This variation in base composition affects both coding and non-coding sequences and seems to reflect a fundamental level of genome organization. However, although we have known about isochores for over 25 years, we still have a poor understanding of why they exist. In this article, we review the current evidence for the three main hypotheses.

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Year:  2001        PMID: 11433361     DOI: 10.1038/35080577

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  165 in total

1.  Compositional gradients in Gramineae genes.

Authors:  Gane Ka-Shu Wong; Jun Wang; Lin Tao; Jun Tan; JianGuo Zhang; Douglas A Passey; Jun Yu
Journal:  Genome Res       Date:  2002-06       Impact factor: 9.043

2.  Weak selection and recent mutational changes influence polymorphic synonymous mutations in humans.

Authors:  Josep M Comeron
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-21       Impact factor: 11.205

3.  Duplication-dependent CG suppression of the seed storage protein genes of maize.

Authors:  Gertrud Lund; Massimiliano Lauria; Per Guldberg; Silvio Zaina
Journal:  Genetics       Date:  2003-10       Impact factor: 4.562

4.  DNA helix: the importance of being GC-rich.

Authors:  Alexander E Vinogradov
Journal:  Nucleic Acids Res       Date:  2003-04-01       Impact factor: 16.971

5.  Phylogenetic analysis of vertebrate fibrillar collagen locates the position of zebrafish alpha3(I) and suggests an evolutionary link between collagen alpha chains and hox clusters.

Authors:  Ghislaine Morvan-Dubois; Dominique Le Guellec; Robert Garrone; Louise Zylberberg; Laure Bonnaud
Journal:  J Mol Evol       Date:  2003-11       Impact factor: 2.395

6.  Changing effective population size and the McDonald-Kreitman test.

Authors:  Adam Eyre-Walker
Journal:  Genetics       Date:  2002-12       Impact factor: 4.562

7.  IsoFinder: computational prediction of isochores in genome sequences.

Authors:  José L Oliver; Pedro Carpena; Michael Hackenberg; Pedro Bernaola-Galván
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

8.  Bayesian Markov chain Monte Carlo sequence analysis reveals varying neutral substitution patterns in mammalian evolution.

Authors:  Dick G Hwang; Phil Green
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-03       Impact factor: 11.205

9.  A genomic basis for the evolution of vertebrate transcription factors containing amino Acid runs.

Authors:  Sandrine Caburet; Daniel Vaiman; Reiner A Veitia
Journal:  Genetics       Date:  2004-08       Impact factor: 4.562

10.  Isochore structures in the genome of the plant Arabidopsis thaliana.

Authors:  Ren Zhang; Chun-Ting Zhang
Journal:  J Mol Evol       Date:  2004-08       Impact factor: 2.395

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