Literature DB >> 11427596

Comparison of restriction fragment length polymorphism, microsatellite length polymorphism, and random amplification of polymorphic DNA analyses for fingerprinting Aspergillus fumigatus isolates.

E Bart-Delabesse1, J Sarfati, J P Debeaupuis, W van Leeuwen, A van Belkum, S Bretagne, J P Latge.   

Abstract

Aspergillus fumigatus fingerprints generated by random amplification of polymorphic DNA (RAPD), restriction fragment length polymorphism (RFLP) upon hybridization with repeated DNA sequences, and PCR detection of microsatellite length polymorphism (MLP) were compared among 67 isolates. In contrast to RAPD, RFLP and MLP gave discriminating and significantly concordant genotyping results.

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Year:  2001        PMID： 11427596      PMCID： PMC88212          DOI： 10.1128/JCM.39.7.2683-2686.2001

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  26 in total

Review 1.  The ins and outs of DNA fingerprinting the infectious fungi.

Authors:  D R Soll
Journal:  Clin Microbiol Rev       Date:  2000-04       Impact factor: 26.132

2.  Microsatellite typing as a new tool for identification of Saccharomyces cerevisiae strains.

Authors:  C Hennequin; A Thierry; G F Richard; G Lecointre; H V Nguyen; C Gaillardin; B Dujon
Journal:  J Clin Microbiol       Date:  2001-02       Impact factor: 5.948

3.  Use of randomly amplified polymorphic DNA markers in comparative genome studies.

Authors:  B M Bowditch; D G Albright; J G Williams; M J Braun
Journal:  Methods Enzymol       Date:  1993       Impact factor: 1.600

Review 4.  Aspergillus fumigatus and aspergillosis.

Authors:  J P Latgé
Journal:  Clin Microbiol Rev       Date:  1999-04       Impact factor: 26.132

5.  Density and molecular epidemiology of Aspergillus in air and relationship to outbreaks of Aspergillus infection.

Authors:  A C Leenders; A van Belkum; M Behrendt; A Luijendijk; H A Verbrugh
Journal:  J Clin Microbiol       Date:  1999-06       Impact factor: 5.948

6.  Usefulness of genotyping with microsatellite markers to investigate hospital-acquired invasive aspergillosis.

Authors:  E Bart-Delabesse; C Cordonnier; S Bretagne
Journal:  J Hosp Infect       Date:  1999-08       Impact factor: 3.926

7.  Molecular typing of environmental and patient isolates of Aspergillus fumigatus from various hospital settings.

Authors:  V Chazalet; J P Debeaupuis; J Sarfati; J Lortholary; P Ribaud; P Shah; M Cornet; H Vu Thien; E Gluckman; G Brücker; J P Latgé
Journal:  J Clin Microbiol       Date:  1998-06       Impact factor: 5.948

8.  Use of randomly amplified polymorphic DNA markers to distinguish isolates of Aspergillus fumigatus.

Authors:  A Aufauvre-Brown; J Cohen; D W Holden
Journal:  J Clin Microbiol       Date:  1992-11       Impact factor: 5.948

9.  Application of polymerase chain reaction to fingerprinting Aspergillus fumigatus by random amplification of polymorphic DNA.

Authors:  K W Loudon; J P Burnie; A P Coke; R C Matthews
Journal:  J Clin Microbiol       Date:  1993-05       Impact factor: 5.948

10.  A study of the origin of 'shadow bands' seen when typing dinucleotide repeat polymorphisms by the PCR.

Authors:  X Y Hauge; M Litt
Journal:  Hum Mol Genet       Date:  1993-04       Impact factor: 6.150
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  29 in total

1.  Microsatellite analysis of three phylogenetic species of Paracoccidioides brasiliensis.

Authors:  Daniel R Matute; Victoria E Sepulveda; Lina M Quesada; Gustavo H Goldman; John W Taylor; Angela Restrepo; Juan G McEwen
Journal:  J Clin Microbiol       Date:  2006-06       Impact factor: 5.948

2.  A cautionary tale: Lack of consistency in allele sizes between two laboratories for a published multilocus microsatellite typing system.

Authors:  Alessandro C Pasqualotto; David W Denning; Michael J Anderson
Journal:  J Clin Microbiol       Date:  2006-12-13       Impact factor: 5.948

Review 3.  Penicillium marneffei infection and recent advances in the epidemiology and molecular biology aspects.

Authors:  Nongnuch Vanittanakom; Chester R Cooper; Matthew C Fisher; Thira Sirisanthana
Journal:  Clin Microbiol Rev       Date:  2006-01       Impact factor: 26.132

Review 4.  Investigating Clinical Issues by Genotyping of Medically Important Fungi: Why and How?

Authors:  Alexandre Alanio; Marie Desnos-Ollivier; Dea Garcia-Hermoso; Stéphane Bretagne
Journal:  Clin Microbiol Rev       Date:  2017-07       Impact factor: 26.132

5.  Differentiation between isolates of Aspergillus fumigatus from breeding turkeys and their environment by genotyping with microsatellite markers.

Authors:  Sybille Lair-Fulleringer; Jacques Guillot; Christophe Desterke; Dominique Seguin; Stephan Warin; Arnaud Bezille; René Chermette; Stéphane Bretagne
Journal:  J Clin Microbiol       Date:  2003-04       Impact factor: 5.948

6.  Use of a novel panel of nine short tandem repeats for exact and high-resolution fingerprinting of Aspergillus fumigatus isolates.

Authors:  Hanneke A de Valk; Jacques F G M Meis; Ilse M Curfs; Konrad Muehlethaler; Johan W Mouton; Corné H W Klaassen
Journal:  J Clin Microbiol       Date:  2005-08       Impact factor: 5.948

7.  Azole-resistant Aspergillus fumigatus isolate with the TR34/L98H mutation in both a fungicide-sprayed field and the lung of a hematopoietic stem cell transplant recipient with invasive aspergillosis.

Authors:  Steffi Rocchi; Etienne Daguindau; Frédéric Grenouillet; Eric Deconinck; Anne-Pauline Bellanger; Dea Garcia-Hermoso; Stéphane Bretagne; Gabriel Reboux; Laurence Millon
Journal:  J Clin Microbiol       Date:  2014-02-19       Impact factor: 5.948

8.  Development of a LightCycler PCR assay for detection and quantification of Aspergillus fumigatus DNA in clinical samples from neutropenic patients.

Authors:  Birgit Spiess; Dieter Buchheidt; Corinna Baust; Heyko Skladny; Wolfgang Seifarth; Udo Zeilfelder; Christine Leib-Mösch; Handan Mörz; Rüdiger Hehlmann
Journal:  J Clin Microbiol       Date:  2003-05       Impact factor: 5.948

9.  Analysis of polymorphic microsatellite markers for typing Penicillium marneffei isolates.

Authors:  Brent A Lasker; Yuping Ran
Journal:  J Clin Microbiol       Date:  2004-04       Impact factor: 5.948

10.  Evaluation of performance of four genotypic methods for studying the genetic epidemiology of Aspergillus fumigatus isolates.

Authors:  Brent A Lasker
Journal:  J Clin Microbiol       Date:  2002-08       Impact factor: 5.948
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