Literature DB >> 11420431

Quantitative evaluation of the lengths of homobifunctional protein cross-linking reagents used as molecular rulers.

N S Green1, E Reisler, K N Houk.   

Abstract

UNLABELLED: Homobifunctional chemical cross-linking reagents are important tools for functional and structural characterization of proteins. Accurate measures of the lengths of these molecules currently are not available, despite their widespread use. Stochastic dynamics calculations now provide quantitative measures of the lengths, and length dispersions, of 32 widely used molecular rulers. Significant differences from published data have been found. SUPPLEMENTAL MATERIAL: See www.proteinscience.org

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Year:  2001        PMID： 11420431      PMCID： PMC2374107          DOI： 10.1110/ps.51201

Source DB:  PubMed          Journal:  Protein Sci        ISSN： 0961-8368            Impact factor:   6.725


  102 in total

1.  Cross-linking of bovine pancreatic ribonuclease A with dimethyl adipimidate.

Authors:  F C Hartman; F Wold
Journal:  Biochemistry       Date:  1967-08       Impact factor: 3.162

2.  A method for isolation and purification of specific antibodies to a protein fused to the GST.

Authors:  M Bar-Peled; N V Raikhel
Journal:  Anal Biochem       Date:  1996-10-01       Impact factor: 3.365

3.  The specific cross-linking of two proteins from the Escherichia coli 30 s ribosomal subunit.

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Journal:  J Mol Biol       Date:  1972-07-14       Impact factor: 5.469

4.  The preparation of a chemically cross-linked complex of the basic pancreatic trypsin inhibitor with trypsin.

Authors:  T W Wang; B Kassell
Journal:  Biochemistry       Date:  1974-02-12       Impact factor: 3.162

5.  Cross-linking of troponin with dimethylimido esters.

Authors:  S E Hitchcock
Journal:  Biochemistry       Date:  1975-11-18       Impact factor: 3.162

6.  Cytotoxicity of a hybrid prepared by coupling diphtheria toxin A-chain with immunoglobulin Fab' with N,N'-o-phenylenedimaleimide.

Authors:  Y Masuho; N Umemoto; T Hara; N Ohtomo
Journal:  Biochem Biophys Res Commun       Date:  1981-09-16       Impact factor: 3.575

7.  Activity in monomers of human cytomegalovirus protease.

Authors:  B Holwerda
Journal:  Biochem Biophys Res Commun       Date:  1999-06-07       Impact factor: 3.575

8.  Control of cell membrane ecto-ATPase by oligomerization state: intermolecular cross-linking modulates ATPase activity.

Authors:  J G Stout; T L Kirley
Journal:  Biochemistry       Date:  1996-06-25       Impact factor: 3.162

9.  Chemical cross-linking reveals a dimeric structure for CTP:phosphocholine cytidylyltransferase.

Authors:  R Cornell
Journal:  J Biol Chem       Date:  1989-05-25       Impact factor: 5.157

10.  Site-directed spin labeling and chemical crosslinking demonstrate that helix V is close to helices VII and VIII in the lactose permease of Escherichia coli.

Authors:  J Wu; J Voss; W L Hubbell; H R Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  1996-09-17       Impact factor: 11.205
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  80 in total

1.  Mining biochemical information: lessons taught by the ribosome.

Authors:  Michelle Whirl-Carrillo; Irene S Gabashvili; Michael Bada; D Rey Banatao; Russ B Altman
Journal:  RNA       Date:  2002-03       Impact factor: 4.942

2.  Conformational dynamics of the SH1-SH2 helix in the transition states of myosin subfragment-1.

Authors:  Lisa K Nitao; Todd O Yeates; Emil Reisler
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

3.  Engineering light-regulated ion channels.

Authors:  Doris L Fortin; Timothy W Dunn; Richard H Kramer
Journal:  Cold Spring Harb Protoc       Date:  2011-06-01

4.  Intermolecular thiol cross-linking via loops in the lactose permease of Escherichia coli.

Authors:  Natalia Ermolova; Lan Guan; H Ronald Kaback
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-21       Impact factor: 11.205

5.  A structure for the yeast prohibitin complex: Structure prediction and evidence from chemical crosslinking and mass spectrometry.

Authors:  Jaap W Back; Marta Artal Sanz; Luitzen De Jong; Leo J De Koning; Leo G J Nijtmans; Chris G De Koster; Les A Grivell; Hans Van Der Spek; Anton O Muijsers
Journal:  Protein Sci       Date:  2002-10       Impact factor: 6.725

6.  Quaternary diamines as mass spectrometry cleavable crosslinkers for protein interactions.

Authors:  Billy Clifford-Nunn; H D Hollis Showalter; Philip C Andrews
Journal:  J Am Soc Mass Spectrom       Date:  2011-12-01       Impact factor: 3.109

7.  Does chemical cross-linking with NHS esters reflect the chemical equilibrium of protein-protein noncovalent interactions in solution?

Authors:  Stefanie Mädler; Markus Seitz; John Robinson; Renato Zenobi
Journal:  J Am Soc Mass Spectrom       Date:  2010-07-07       Impact factor: 3.109

8.  Elucidating the higher-order structure of biopolymers by structural probing and mass spectrometry: MS3D.

Authors:  Daniele Fabris; Eizadora T Yu
Journal:  J Mass Spectrom       Date:  2010-08       Impact factor: 1.982

9.  Immobilization of the plug domain inside the SecY channel allows unrestricted protein translocation.

Authors:  Jelger A Lycklama A Nijeholt; Monica Bulacu; Siewert Jan Marrink; Arnold J M Driessen
Journal:  J Biol Chem       Date:  2010-05-19       Impact factor: 5.157

10.  Topologically random insertion of EmrE supports a pathway for evolution of inverted repeats in ion-coupled transporters.

Authors:  Iris Nasie; Sonia Steiner-Mordoch; Ayala Gold; Shimon Schuldiner
Journal:  J Biol Chem       Date:  2010-03-22       Impact factor: 5.157
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