Literature DB >> 11417202

Issues in the design of medical ontologies used for knowledge sharing.

A Burgun1, G Botti, M Fieschi, P Le Beux.   

Abstract

Recent work in Medical Informatics is exploring the development and the use of formal ontologies as a way of specifying content-specific agreements for the sharing and reuse of knowledge among several computer systems. We describe the role of ontologies in supporting knowledge sharing activities in medicine Principles for the design of ontologies have been proposed, mainly in other domains: these principles include parsimony, clarity, representation of categories versus terms, and coherence. We analyze how and why these principles can or cannot be applied from case studies from medical systems. Regarding the fact that most of medical concepts are empirical, selected design decisions are discussed. An alternative representation choice consists in mapping principled general core ontologies and domain ontologies.

Mesh:

Year:  2001        PMID: 11417202     DOI: 10.1023/a:1005668530110

Source DB:  PubMed          Journal:  J Med Syst        ISSN: 0148-5598            Impact factor:   4.460


  28 in total

Review 1.  Dimensions of knowledge sharing and reuse.

Authors:  M A Musen
Journal:  Comput Biomed Res       Date:  1992-10

2.  Towards cooperative patient management through organizational and medical ontologies.

Authors:  S Falasconi; L Dazzi; G Lanzola; S Quaglini; R Saracco; M Stefanelli
Journal:  Methods Inf Med       Date:  1998-11       Impact factor: 2.176

3.  Discovering the modifiers in a terminology data set.

Authors:  A T McCray; A C Browne
Journal:  Proc AMIA Symp       Date:  1998

4.  The potential of the digital anatomist foundational model for assuring consistency in UMLS sources.

Authors:  J L Mejino; C Rosse
Journal:  Proc AMIA Symp       Date:  1998

5.  The digital anatomist foundational model: principles for defining and structuring its concept domain.

Authors:  C Rosse; L G Shapiro; J F Brinkley
Journal:  Proc AMIA Symp       Date:  1998

6.  Computer assisted medical diagnosis using the Web.

Authors:  L P Seka; A Fresnel; D Delamarre; C Riou; A Burgun; B Pouliquen; R Duvauferrier; P Le Beux
Journal:  Int J Med Inform       Date:  1997-11       Impact factor: 4.046

7.  Motivation and organizational principles for anatomical knowledge representation: the digital anatomist symbolic knowledge base.

Authors:  C Rosse; J L Mejino; B R Modayur; R Jakobovits; K P Hinshaw; J F Brinkley
Journal:  J Am Med Inform Assoc       Date:  1998 Jan-Feb       Impact factor: 4.497

8.  Evaluation of the Unified Medical Language System as a medical knowledge source.

Authors:  O Bodenreider; A Burgun; G Botti; M Fieschi; P Le Beux; F Kohler
Journal:  J Am Med Inform Assoc       Date:  1998 Jan-Feb       Impact factor: 4.497

9.  A Web terminology server using UMLS for the description of medical procedures.

Authors:  A Burgun; P Denier; O Bodenreider; G Botti; D Delamarre; B Pouliquen; P Oberlin; J M Lévéque; B Lukacs; F Kohler; M Fieschi; P Le Beux
Journal:  J Am Med Inform Assoc       Date:  1997 Sep-Oct       Impact factor: 4.497

10.  [Creation, development and maintenance of the data-base of a computer-assisted diagnostic system (ADM) (author's transl)].

Authors:  P Lenoir; M J Roger; C Frangeul; G Chalès
Journal:  Med Inform (Lond)       Date:  1981 Jan-Mar
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  8 in total

1.  Regional variation in medical classification agreement: benchmarking the coding gap.

Authors:  Daniel Lorence
Journal:  J Med Syst       Date:  2003-10       Impact factor: 4.460

2.  A unified architecture for biomedical search engines based on semantic web technologies.

Authors:  Vahid Jalali; Mohammad Reza Matash Borujerdi
Journal:  J Med Syst       Date:  2009-08-25       Impact factor: 4.460

3.  Creation of a master table for checking indication and contraindication of medicine from a knowledge base linked with a thesaurus.

Authors:  Shanmei Ji; Yasushi Matsumura; Shigeki Kuwata; Hirohiko Nakano; Yufeng Chen; Tadamasa Teratani; Qiyan Zhang; Takahiro Mineno; Hiroshi Takeda
Journal:  J Med Syst       Date:  2004-12       Impact factor: 4.460

4.  Development and validation of XML-based calculations within order sets.

Authors:  Nathan C Hulse; Guilherme Del Fiol; Roberto A Rocha
Journal:  AMIA Annu Symp Proc       Date:  2005

5.  Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets.

Authors:  Marc Aubry; Annabelle Monnier; Celine Chicault; Marie de Tayrac; Marie-Dominique Galibert; Anita Burgun; Jean Mosser
Journal:  BMC Bioinformatics       Date:  2006-05-04       Impact factor: 3.169

6.  Biopsy Records Do Not Reduce Diagnosis Variability in Cancer Patient EHRs: Are We More Uncertain After Knowing?

Authors:  Jose-Franck Diaz-Garelli; Brian J Wells; Caleb Yelton; Roy Strowd; Umit Topaloglu
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2018-05-18

7.  A tale of three subspecialties: Diagnosis recording patterns are internally consistent but Specialty-Dependent.

Authors:  Jose-Franck Diaz-Garelli; Roy Strowd; Tamjeed Ahmed; Brian J Wells; Rebecca Merrill; Javier Laurini; Boris Pasche; Umit Topaloglu
Journal:  JAMIA Open       Date:  2019-08-05

Review 8.  An Overview of Ontologies in Virtual Reality-Based Training for Healthcare Domain.

Authors:  Ummul Hanan Mohamad; Mohammad Nazir Ahmad; Youcef Benferdia; Azrulhizam Shapi'i; Mohd Yazid Bajuri
Journal:  Front Med (Lausanne)       Date:  2021-07-09
  8 in total

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