Literature DB >> 11414934

Codon distributions in DNA.

A Som1, S Chattopadhyay, J Chakrabarti, D Bandyopadhyay.   

Abstract

The codons, 64 in number, are distributed over the coding parts of DNA sequences. The distribution function is the plot of frequency versus rank of the codons. These distributions are characterized by parameters that are almost universal, i.e., gene independent. There is but a small part that depends on the gene. We present the theory to calculate the universal (gene-independent) part. The part that is gene-specific, however, has undetermined overlaps and fluctuations.

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Year:  2001        PMID: 11414934     DOI: 10.1103/PhysRevE.63.051908

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  2 in total

1.  Word organization in coding DNA: a mathematical model.

Authors:  Indranil Mukhopadhyay; Anup Som; Satyabrata Sahoo
Journal:  Theory Biosci       Date:  2006-04-27       Impact factor: 1.919

2.  Gaussian-Distributed Codon Frequencies of Genomes.

Authors:  Bohdan B Khomtchouk; Wolfgang Nonner
Journal:  G3 (Bethesda)       Date:  2019-05-07       Impact factor: 3.154

  2 in total

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