Literature DB >> 11413373

Phylogenetic reconstruction of intrapatient evolution of human immunodeficiency virus type 1: predominance of drift and purifying selection.

Laurens Kils-Hütten1, Rémi Cheynier2, Simon Wain-Hobson2, Andreas Meyerhans1.   

Abstract

The intra-host evolution of 73 human immunodeficiency virus type 1 quasispecies was analysed by split decomposition analysis. Non-synonymous and synonymous nucleotide substitutions were counted along the shortest path connecting all sequences and compared with the numbers expected under the assumption of a random model of mutation. For the majority of substitutions, drift and negative selection seemed to prevail.

Entities:  

Mesh：

Year:  2001        PMID： 11413373     DOI： 10.1099/0022-1317-82-7-1621

Source DB:  PubMed          Journal:  J Gen Virol        ISSN： 0022-1317            Impact factor:   3.891


  9 in total

1.  Epidemiology, genetic diversity, and evolution of endemic feline immunodeficiency virus in a population of wild cougars.

Authors:  Roman Biek; Allen G Rodrigo; David Holley; Alexei Drummond; Charles R Anderson; Howard A Ross; Mary Poss
Journal:  J Virol       Date:  2003-09       Impact factor: 5.103

2.  Recombination and migration of Cryphonectria hypovirus 1 as inferred from gene genealogies and the coalescent.

Authors:  Ignazio Carbone; Yir-Chung Liu; Bradley I Hillman; Michael G Milgroom
Journal:  Genetics       Date:  2004-04       Impact factor: 4.562

3.  Characterization of human endogenous retroviral elements in the blood of HIV-1-infected individuals.

Authors:  Rafael Contreras-Galindo; Mark H Kaplan; Angie C Contreras-Galindo; Marta J Gonzalez-Hernandez; Ilaria Ferlenghi; Fabiola Giusti; Eric Lorenzo; Scott D Gitlin; Michael H Dosik; Yasuhiro Yamamura; David M Markovitz
Journal:  J Virol       Date:  2011-10-26       Impact factor: 5.103

4.  Turnover of env variable region 1 and 2 genotypes in subjects with late-stage human immunodeficiency virus type 1 infection.

Authors:  Kathryn M Kitrinos; Noah G Hoffman; Julie A E Nelson; Ronald Swanstrom
Journal:  J Virol       Date:  2003-06       Impact factor: 5.103

5.  Intrapatient diversity and its correlation with viral setpoint in human immunodeficiency virus type 1 CRF02_A/G-IbNG infection.

Authors:  Indu Mani; Peter Gilbert; Jean-Louis Sankalé; Geoffrey Eisen; Souleymane Mboup; Phyllis J Kanki
Journal:  J Virol       Date:  2002-11       Impact factor: 5.103

6.  Stable multi-infection of splenocytes during SIV infection--the basis for continuous recombination.

Authors:  Anke Schultz; Sieghart Sopper; Ulrike Sauermann; Andreas Meyerhans; Rodolphe Suspène
Journal:  Retrovirology       Date:  2012-04-23       Impact factor: 4.602

7.  Rapid evolution of the env gene leader sequence in cats naturally infected with feline immunodeficiency virus.

Authors:  Paweł M Bęczkowski; Joseph Hughes; Roman Biek; Annette Litster; Brian J Willett; Margaret J Hosie
Journal:  J Gen Virol       Date:  2014-12-22       Impact factor: 3.891

8.  Endless Forms: Within-Host Variation in the Structure of the West Nile Virus RNA Genome during Serial Passage in Bird Hosts.

Authors:  Stacey L P Scroggs; Nathan D Grubaugh; Johnny A Sena; Anitha Sundararajan; Faye D Schilkey; Darci R Smith; Gregory D Ebel; Kathryn A Hanley
Journal:  mSphere       Date:  2019-06-26       Impact factor: 4.389

9.  Quantification of unintegrated HIV-1 DNA at the single cell level in vivo.

Authors:  Rodolphe Suspène; Andreas Meyerhans
Journal:  PLoS One       Date:  2012-05-04       Impact factor: 3.240
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.