Literature DB >> 11406378

The crystal structures of DNA Holliday junctions.

P S Ho1, B F Eichman.   

Abstract

Nearly 40 years ago, Holliday proposed a four-stranded complex or junction as the central intermediate in the general mechanism of genetic recombination. During the past two years, six single-crystal structures of such DNA junctions have been determined by three different research groups. These structures all essentially adopt the antiparallel stacked-X conformation, but can be classified into three distinct categories: RNA-DNA junctions; ACC trinucleotide junctions; and drug-induced junctions. Together, these structures provide insight into how local and distant interactions help to define the detailed and general physical features of Holliday junctions at the atomic level.

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Year:  2001        PMID: 11406378     DOI: 10.1016/s0959-440x(00)00219-0

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  17 in total

1.  Sequence-dependent folding of DNA three-way junctions.

Authors:  René Assenberg; Anthony Weston; Don L N Cardy; Keith R Fox
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

2.  The inherent properties of DNA four-way junctions: comparing the crystal structures of holliday junctions.

Authors:  Brandt F Eichman; Miguel Ortiz-Lombardía; Joan Aymamí; Miquel Coll; Pui Shing Ho
Journal:  J Mol Biol       Date:  2002-07-26       Impact factor: 5.469

3.  Single-particle tracking for DNA tether length monitoring.

Authors:  Noëlle Pouget; Cynthia Dennis; Catherine Turlan; Mikhail Grigoriev; Michaël Chandler; Laurence Salomé
Journal:  Nucleic Acids Res       Date:  2004-05-20       Impact factor: 16.971

4.  Definitions and analysis of DNA Holliday junction geometry.

Authors:  Jeffrey Watson; Franklin A Hays; P Shing Ho
Journal:  Nucleic Acids Res       Date:  2004-06-01       Impact factor: 16.971

5.  Conformational model of the Holliday junction transition deduced from molecular dynamics simulations.

Authors:  Jin Yu; Taekjip Ha; Klaus Schulten
Journal:  Nucleic Acids Res       Date:  2004-12-21       Impact factor: 16.971

6.  Holliday junction dynamics and branch migration: single-molecule analysis.

Authors:  Mikhail Karymov; Douglas Daniel; Otto F Sankey; Yuri L Lyubchenko
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-25       Impact factor: 11.205

Review 7.  The stacked-X DNA Holliday junction and protein recognition.

Authors:  Patricia A Khuu; Andrea Regier Voth; Franklin A Hays; P Shing Ho
Journal:  J Mol Recognit       Date:  2006 May-Jun       Impact factor: 2.137

8.  Design of minimally strained nucleic Acid nanotubes.

Authors:  William B Sherman; Nadrian C Seeman
Journal:  Biophys J       Date:  2006-03-31       Impact factor: 4.033

9.  Structure, dynamics, and branch migration of a DNA Holliday junction: a single-molecule fluorescence and modeling study.

Authors:  Mikhail A Karymov; Mathivanan Chinnaraj; Aleksey Bogdanov; Annankoil R Srinivasan; Guohui Zheng; Wilma K Olson; Yuri L Lyubchenko
Journal:  Biophys J       Date:  2008-07-25       Impact factor: 4.033

10.  Thermodynamics of forming a parallel DNA crossover.

Authors:  Charles H Spink; Liang Ding; Qingyi Yang; Richard D Sheardy; Nadrian C Seeman
Journal:  Biophys J       Date:  2009-07-22       Impact factor: 4.033

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