Literature DB >> 11406374

NMR methodology for the study of nucleic acids.

L Zídek1, R Stefl, V Sklenár.   

Abstract

During the past few years, NMR methodology for the study of nucleic acids has benefited from new developments that greatly improved state-of-the-art technology for the precise determination of three-dimensional structures. Substantial progress has been made in designing experimental protocols for the measurement of residual dipolar couplings, in sensitivity optimization of triple-resonance experiments and in detection of hydrogen bonds and in developing computational methods for structure refinement using NMR restraints.

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Year:  2001        PMID: 11406374     DOI: 10.1016/s0959-440x(00)00218-9

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  10 in total

1.  1H-1H correlations across N-H...N hydrogen bonds in nucleic acids.

Authors:  A Majumdar; Y Gosser; D J Patel
Journal:  J Biomol NMR       Date:  2001-12       Impact factor: 2.835

2.  Additional hydrogen bonds and base-pair kinetics in the symmetrical AMP-DNA aptamer complex.

Authors:  S Nonin-Lecomte; C H Lin; D J Patel
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

3.  Development of CHARMM polarizable force field for nucleic acid bases based on the classical Drude oscillator model.

Authors:  Christopher M Baker; Victor M Anisimov; Alexander D MacKerell
Journal:  J Phys Chem B       Date:  2010-12-17       Impact factor: 2.991

Review 4.  Computational approaches to 3D modeling of RNA.

Authors:  Christian Laing; Tamar Schlick
Journal:  J Phys Condens Matter       Date:  2010-06-15       Impact factor: 2.333

5.  Enhanced NMR signal detection of imino protons in RNA molecules containing 3' dangling nucleotides.

Authors:  Andrew N Amborski; Philip E Johnson
Journal:  J Biomol NMR       Date:  2008-02-14       Impact factor: 2.835

6.  Longitudinal-relaxation-enhanced NMR experiments for the study of nucleic acids in solution.

Authors:  Jonathan Farjon; Jérôme Boisbouvier; Paul Schanda; Arthur Pardi; Jean-Pierre Simorre; Bernhard Brutscher
Journal:  J Am Chem Soc       Date:  2009-06-24       Impact factor: 15.419

7.  N(6)-Methyladenosine Modification in a Long Noncoding RNA Hairpin Predisposes Its Conformation to Protein Binding.

Authors:  Katherine I Zhou; Marc Parisien; Qing Dai; Nian Liu; Luda Diatchenko; Joseph R Sachleben; Tao Pan
Journal:  J Mol Biol       Date:  2015-09-04       Impact factor: 5.469

8.  Automatic workflow for the classification of local DNA conformations.

Authors:  Petr Čech; Jaromír Kukal; Jiří Černý; Bohdan Schneider; Daniel Svozil
Journal:  BMC Bioinformatics       Date:  2013-06-25       Impact factor: 3.169

9.  TEMPO-derived spin labels linked to the nucleobases adenine and cytosine for probing local structural perturbations in DNA by EPR spectroscopy.

Authors:  Dnyaneshwar B Gophane; Snorri Th Sigurdsson
Journal:  Beilstein J Org Chem       Date:  2015-02-09       Impact factor: 2.883

10.  G-triplex structure and formation propensity.

Authors:  Linda Cerofolini; Jussara Amato; Andrea Giachetti; Vittorio Limongelli; Ettore Novellino; Michele Parrinello; Marco Fragai; Antonio Randazzo; Claudio Luchinat
Journal:  Nucleic Acids Res       Date:  2014-11-06       Impact factor: 16.971

  10 in total

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