Literature DB >> 11401437

A complete map of the human ribosomal protein genes: assignment of 80 genes to the cytogenetic map and implications for human disorders.

T Uechi1, T Tanaka, N Kenmochi.   

Abstract

Mapping of the human ribosomal protein (RP) genes has been completed, and all 80 different genes were placed on a cytogenetic map of the human genome. Because of the existence of processed pseudogenes, the localization of the RP genes was complicated, and five genes had remained to be mapped. Here we developed a novel strategy to identify sequence-tagged sites (STSs) at introns of the RP genes, and we localized RPL14, RPL22, RPL35, RPL36, and RPL39 within the chromosomes by radiation hybrid mapping. Unlike the case of eubacteria or archaebacteria, human RP genes are widely scattered about the genome. Together with the previous results, both sex chromosomes and 20 autosomes (all but chromosomes 7 and 21) were found to carry one or more RP genes. To explore the possible involvement of RP genes in human disorders, all 80 genes were assigned to cytogenetic bands according to a published cytogenetic BAC-STS map of the human genome. We compared the assigned positions with candidate regions for Mendelian disorders and found certain genes that might be involved in particular human disorders. Copyright 2001 Academic Press.

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Year:  2001        PMID: 11401437     DOI: 10.1006/geno.2000.6470

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  61 in total

1.  Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22.

Authors:  Paul M Harrison; Hedi Hegyi; Suganthi Balasubramanian; Nicholas M Luscombe; Paul Bertone; Nathaniel Echols; Ted Johnson; Mark Gerstein
Journal:  Genome Res       Date:  2002-02       Impact factor: 9.043

2.  Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome.

Authors:  Zhaolei Zhang; Paul M Harrison; Yin Liu; Mark Gerstein
Journal:  Genome Res       Date:  2003-12       Impact factor: 9.043

3.  RPG: the Ribosomal Protein Gene database.

Authors:  Akihiro Nakao; Maki Yoshihama; Naoya Kenmochi
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

4.  Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome.

Authors:  Zhaolei Zhang; Paul Harrison; Mark Gerstein
Journal:  Genome Res       Date:  2002-10       Impact factor: 9.043

Review 5.  Not just for housekeeping: protein initiation and elongation factors in cell growth and tumorigenesis.

Authors:  Sarah Thornton; Nisha Anand; Dan Purcell; Jonathan Lee
Journal:  J Mol Med (Berl)       Date:  2003-08-01       Impact factor: 4.599

6.  Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale.

Authors:  Odile Lecompte; Raymond Ripp; Jean-Claude Thierry; Dino Moras; Olivier Poch
Journal:  Nucleic Acids Res       Date:  2002-12-15       Impact factor: 16.971

Review 7.  MYC as a regulator of ribosome biogenesis and protein synthesis.

Authors:  Jan van Riggelen; Alper Yetil; Dean W Felsher
Journal:  Nat Rev Cancer       Date:  2010-04       Impact factor: 60.716

8.  Pseudogene: lessons from PCR bias, identification and resurrection.

Authors:  Shan-Min Chen; Ka-Yan Ma; Jin Zeng
Journal:  Mol Biol Rep       Date:  2010-11-30       Impact factor: 2.316

9.  Draft genome of the red harvester ant Pogonomyrmex barbatus.

Authors:  Chris R Smith; Christopher D Smith; Hugh M Robertson; Martin Helmkampf; Aleksey Zimin; Mark Yandell; Carson Holt; Hao Hu; Ehab Abouheif; Richard Benton; Elizabeth Cash; Vincent Croset; Cameron R Currie; Eran Elhaik; Christine G Elsik; Marie-Julie Favé; Vilaiwan Fernandes; Joshua D Gibson; Dan Graur; Wulfila Gronenberg; Kirk J Grubbs; Darren E Hagen; Ana Sofia Ibarraran Viniegra; Brian R Johnson; Reed M Johnson; Abderrahman Khila; Jay W Kim; Kaitlyn A Mathis; Monica C Munoz-Torres; Marguerite C Murphy; Julie A Mustard; Rin Nakamura; Oliver Niehuis; Surabhi Nigam; Rick P Overson; Jennifer E Placek; Rajendhran Rajakumar; Justin T Reese; Garret Suen; Shu Tao; Candice W Torres; Neil D Tsutsui; Lumi Viljakainen; Florian Wolschin; Jürgen Gadau
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-31       Impact factor: 11.205

10.  Shared distal regulatory regions may contribute to the coordinated expression of human ribosomal protein genes.

Authors:  Saidi Wang; Haiyan Hu; Xiaoman Li
Journal:  Genomics       Date:  2020-03-30       Impact factor: 5.736

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