Literature DB >> 11399085

Very high resolution structure of a trematode hemoglobin displaying a TyrB10-TyrE7 heme distal residue pair and high oxygen affinity.

A Pesce1, S Dewilde, L Kiger, M Milani, P Ascenzi, M C Marden, M L Van Hauwaert, J Vanfleteren, L Moens, M Bolognesi.   

Abstract

Monomeric hemoglobin from the trematode Paramphistomum epiclitum displays very high oxygen affinity (P(50)<0.001 mm Hg) and an unusual heme distal site containing tyrosyl residues at the B10 and E7 positions. The crystal structure of aquo-met P. epiclitum hemoglobin, solved at 1.17 A resolution via multiwavelength anomalous dispersion techniques (R-factor=0.121), shows that the heme distal site pocket residue TyrB10 is engaged in hydrogen bonding to the iron-bound ligand. By contrast, residue TyrE7 is unexpectedly locked next to the CD globin region, in a conformation unsuitable for heme-bound ligand stabilisation. Such structural organization of the E7 distal residue differs strikingly from that observed in the nematode Ascaris suum hemoglobin (bearing TyrB10 and GlnE7 residues), which also displays very high oxygen affinity. The oxygenation and carbonylation parameters of wild-type P. epiclitum Hb as well as of single- and double-site mutants, with residue substitutions at positions B10, E7 and E11, have been determined and are discussed here in the light of the protein atomic resolution crystal structure. Copyright 2001 Academic Press.

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Year:  2001        PMID: 11399085     DOI: 10.1006/jmbi.2001.4731

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  12 in total

1.  Molecular dynamics free energy calculations to assess the possibility of water existence in protein nonpolar cavities.

Authors:  Masataka Oikawa; Yoshiteru Yonetani
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

2.  A globin domain in a neuronal transmembrane receptor of Caenorhabditis elegans and Ascaris suum: molecular modeling and functional properties.

Authors:  Lesley Tilleman; Francesca Germani; Sasha De Henau; Signe Helbo; Filip Desmet; Herald Berghmans; Sabine Van Doorslaer; David Hoogewijs; Liliane Schoofs; Bart P Braeckman; Luc Moens; Angela Fago; Sylvia Dewilde
Journal:  J Biol Chem       Date:  2015-02-09       Impact factor: 5.157

3.  O2 migration pathways are not conserved across proteins of a similar fold.

Authors:  Jordi Cohen; Klaus Schulten
Journal:  Biophys J       Date:  2007-08-10       Impact factor: 4.033

4.  Refinement by shifting secondary structure elements improves sequence alignments.

Authors:  Jing Tong; Jimin Pei; Zbyszek Otwinowski; Nick V Grishin
Journal:  Proteins       Date:  2015-01-13

5.  A TyrCD1/TrpG8 hydrogen bond network and a TyrB10TyrCD1 covalent link shape the heme distal site of Mycobacterium tuberculosis hemoglobin O.

Authors:  Mario Milani; Pierre-Yves Savard; Hugues Ouellet; Paolo Ascenzi; Michel Guertin; Martino Bolognesi
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-28       Impact factor: 11.205

6.  The hemoglobins of the trematodes Fasciola hepatica and Paramphistomum epiclitum: a molecular biological, physico-chemical, kinetic, and vaccination study.

Authors:  Sylvia Dewilde; A Iulia Ioanitescu; Laurent Kiger; Kambiz Gilany; Michael C Marden; Sabine Van Doorslaer; Jozef Vercruysse; Alessandra Pesce; Marco Nardini; Martino Bolognesi; Luc Moens
Journal:  Protein Sci       Date:  2008-07-11       Impact factor: 6.725

7.  Rapid comparison of properties on protein surface.

Authors:  Lee Sael; David La; Bin Li; Raif Rustamov; Daisuke Kihara
Journal:  Proteins       Date:  2008-10

Review 8.  Crystallographic evidence for dioxygen interactions with iron proteins.

Authors:  M Arménia Carrondo; Isabel Bento; Pedro M Matias; Peter F Lindley
Journal:  J Biol Inorg Chem       Date:  2007-02-21       Impact factor: 3.862

Review 9.  Conservation of the three-dimensional structure in non-homologous or unrelated proteins.

Authors:  Konstantinos Sousounis; Carl E Haney; Jin Cao; Bharath Sunchu; Panagiotis A Tsonis
Journal:  Hum Genomics       Date:  2012-08-02       Impact factor: 4.639

10.  Molecular characterization of Clonorchis sinensis secretory myoglobin: delineating its role in anti-oxidative survival.

Authors:  Mengyu Ren; Lei He; Yan Huang; Qiang Mao; Shan Li; Honglin Qu; Meng Bian; Pei Liang; Xueqing Chen; Jinsi Ling; Tingjing Chen; Chi Liang; Xiaoyun Wang; Xuerong Li; Xinbing Yu
Journal:  Parasit Vectors       Date:  2014-05-29       Impact factor: 3.876

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