Literature DB >> 11395440

SOAP, cleaning multiple alignments from unstable blocks.

A Löytynoja1, M C Milinkovitch.   

Abstract

SUMMARY: SOAP is a stand-alone, multi-platform program to test the stability of a multiple alignment of molecular sequences.

Mesh：

Year:  2001        PMID： 11395440     DOI： 10.1093/bioinformatics/17.6.573

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  30 in total

1.  Feeding specialization and host-derived chemical defense in Chrysomeline leaf beetles did not lead to an evolutionary dead end.

Authors:  A Termonia; T H Hsiao; J M Pasteels; M C Milinkovitch
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-20       Impact factor: 11.205

2.  Molecular phylogenetic analyses of the mitochondrial ADP-ATP carriers: the Plantae/Fungi/Metazoa trichotomy revisited.

Authors:  A Löytynoja; M C Milinkovitch
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

3.  Competition and phylogeny determine community structure in Müllerian co-mimics.

Authors:  Markos A Alexandrou; Claudio Oliveira; Marjorie Maillard; Rona A R McGill; Jason Newton; Simon Creer; Martin I Taylor
Journal:  Nature       Date:  2011-01-06       Impact factor: 49.962

4.  An alignment confidence score capturing robustness to guide tree uncertainty.

Authors:  Osnat Penn; Eyal Privman; Giddy Landan; Dan Graur; Tal Pupko
Journal:  Mol Biol Evol       Date:  2010-03-05       Impact factor: 16.240

5.  Extreme mitochondrial evolution in the ctenophore Mnemiopsis leidyi: Insight from mtDNA and the nuclear genome.

Authors:  Walker Pett; Joseph F Ryan; Kevin Pang; James C Mullikin; Mark Q Martindale; Andreas D Baxevanis; Dennis V Lavrov
Journal:  Mitochondrial DNA       Date:  2011-10-10

6.  Erasing errors due to alignment ambiguity when estimating positive selection.

Authors:  Benjamin Redelings
Journal:  Mol Biol Evol       Date:  2014-05-27       Impact factor: 16.240

7.  Mitochondrial genome of Savalia savaglia (Cnidaria, Hexacorallia) and early metazoan phylogeny.

Authors:  F Sinniger; P Chevaldonné; J Pawlowski
Journal:  J Mol Evol       Date:  2007-01-08       Impact factor: 2.395

8.  Diversity of sponge mitochondrial introns revealed by cox 1 sequences of Tetillidae.

Authors:  Amir Szitenberg; Chagai Rot; Micha Ilan; Dorothée Huchon
Journal:  BMC Evol Biol       Date:  2010-09-20       Impact factor: 3.260

9.  Assessing the applicability of the GTR nucleotide substitution model through simulations.

Authors:  Laurent Gatto; Daniele Catanzaro; Michel C Milinkovitch
Journal:  Evol Bioinform Online       Date:  2007-02-04       Impact factor: 1.625

10.  The mitochondrial genomes of sponges provide evidence for multiple invasions by Repetitive Hairpin-forming Elements (RHE).

Authors:  Dirk Erpenbeck; Oliver Voigt; Gert Wörheide; Dennis V Lavrov
Journal:  BMC Genomics       Date:  2009-12-09       Impact factor: 3.969
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.