Literature DB >> 11389477

Sharing gene expression data: an array of options.

D H Geschwind1.   

Abstract

Sharing of microarray data has many advantages for the scientific and biomedical community, and should be advocated by neuroscience journals. The goals of sharing are manifold, and include improving analysis and confidence in results, and facilitating global comparisons between experiments, while at the same time, not penalizing those who share. The sharing of microarray data poses unique challenges relative to more generic data such as DNA sequences. These challenges are surmountable, and various sharing formats are possible. Centralized non-commercial databases are being developed to facilitate this process.

Mesh:

Year:  2001        PMID: 11389477     DOI: 10.1038/35077576

Source DB:  PubMed          Journal:  Nat Rev Neurosci        ISSN: 1471-003X            Impact factor:   34.870


  10 in total

1.  An evaluation of tyramide signal amplification and archived fixed and frozen tissue in microarray gene expression analysis.

Authors:  Stanislav L Karsten; Vivianna M D Van Deerlin; Chiara Sabatti; Lisa H Gill; Daniel H Geschwind
Journal:  Nucleic Acids Res       Date:  2002-01-15       Impact factor: 16.971

Review 2.  Gene expression profiling with DNA microarrays: advancing our understanding of psychiatric disorders.

Authors:  Julie Pongrac; Frank A Middleton; David A Lewis; Pat Levitt; Károly Mirnics
Journal:  Neurochem Res       Date:  2002-10       Impact factor: 3.996

Review 3.  Successes and rewards in sharing digital reconstructions of neuronal morphology.

Authors:  Giorgio A Ascoli
Journal:  Neuroinformatics       Date:  2007

Review 4.  Neuroscience in the era of functional genomics and systems biology.

Authors:  Daniel H Geschwind; Genevieve Konopka
Journal:  Nature       Date:  2009-10-15       Impact factor: 49.962

Review 5.  Using genome-wide expression profiling to define gene networks relevant to the study of complex traits: from RNA integrity to network topology.

Authors:  M A O'Brien; B N Costin; M F Miles
Journal:  Int Rev Neurobiol       Date:  2012       Impact factor: 3.230

6.  Biomarkers in early-phase trials: fundamental issues.

Authors:  Laura M Yee; Tracy G Lively; Lisa M McShane
Journal:  Bioanalysis       Date:  2018-06-20       Impact factor: 2.695

Review 7.  Perspectives and limitations of gene expression profiling in rheumatology: new molecular strategies.

Authors:  Thomas Häupl; Veit Krenn; Bruno Stuhlmüller; Andreas Radbruch; Gerd R Burmester
Journal:  Arthritis Res Ther       Date:  2004-06-04       Impact factor: 5.156

8.  BRB-ArrayTools Data Archive for human cancer gene expression: a unique and efficient data sharing resource.

Authors:  Yingdong Zhao; Richard Simon
Journal:  Cancer Inform       Date:  2008-04-21

9.  The PhenoGen informatics website: tools for analyses of complex traits.

Authors:  Sanjiv V Bhave; Cheryl Hornbaker; Tzu L Phang; Laura Saba; Razvan Lapadat; Katherina Kechris; Jeanette Gaydos; Daniel McGoldrick; Andrew Dolbey; Sonia Leach; Brian Soriano; Allison Ellington; Eric Ellington; Kendra Jones; Jonathan Mangion; John K Belknap; Robert W Williams; Lawrence E Hunter; Paula L Hoffman; Boris Tabakoff
Journal:  BMC Genet       Date:  2007-08-30       Impact factor: 2.797

Review 10.  Expression quantitative trait loci and the PhenoGen database.

Authors:  Laura Saba; Paula L Hoffman; Cheryl Hornbaker; Sanjiv V Bhave; Boris Tabakoff
Journal:  Alcohol Res Health       Date:  2008
  10 in total

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