Literature DB >> 11385706

Automation in genotyping of single nucleotide polymorphisms.

I G Gut1.   

Abstract

Automation for genotyping of single nucleotide polymorphisms (SNPs) can be split into the automation of the sample preparation and the automation of the analysis technology. SNP genotyping methods are reviewed and solutions for their automation discussed. A panacea for SNP genotyping does not exist. Different scientific questions require adapted solutions. The choice of a technology for SNP genotyping depends on whether few different SNPs are to be genotyped in many individuals, or many different SNPs are to be genotyped in few individuals. The requirements of throughput and the ease of establishing an SNP genotyping operation are important, as well as the degree of integration. The potential and state-of-the-art of different solutions are outlined. Copyright 2001 Wiley-Liss, Inc.

Mesh：

Year:  2001        PMID： 11385706     DOI： 10.1002/humu.1131

Source DB:  PubMed          Journal:  Hum Mutat        ISSN： 1059-7794            Impact factor:   4.878


  32 in total

1.  Hierarchical high-throughput SNP genotyping of the human Y chromosome using MALDI-TOF mass spectrometry.

Authors:  Silvia Paracchini; Barbara Arredi; Rod Chalk; Chris Tyler-Smith
Journal:  Nucleic Acids Res       Date:  2002-03-15       Impact factor: 16.971

2.  Facile method for automated genotyping of single nucleotide polymorphisms by mass spectrometry.

Authors:  Sascha Sauer; David H Gelfand; Francis Boussicault; Keith Bauer; Fred Reichert; Ivo G Gut
Journal:  Nucleic Acids Res       Date:  2002-03-01       Impact factor: 16.971

3.  Re-sequencing of multiple single nucleotide polymorphisms by liquid chromatography-electrospray ionization mass spectrometry.

Authors:  H Oberacher; P J Oefner; G Hölzl; A Premstaller; K Davis; C G Huber
Journal:  Nucleic Acids Res       Date:  2002-07-15       Impact factor: 16.971

4.  SNP2CAPS: a SNP and INDEL analysis tool for CAPS marker development.

Authors:  Thomas Thiel; Raja Kota; Ivo Grosse; Nils Stein; Andreas Graner
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

5.  Molecular haplotyping at high throughput.

Authors:  Jörg Tost; Ole Brandt; Francis Boussicault; David Derbala; Christophe Caloustian; Doris Lechner; Ivo Glynne Gut
Journal:  Nucleic Acids Res       Date:  2002-10-01       Impact factor: 16.971

6.  Linkage disequilibrium and sequence diversity in a 500-kbp region around the adh1 locus in elite maize germplasm.

Authors:  Mark Jung; Ada Ching; Dinakar Bhattramakki; Maureen Dolan; Scott Tingey; Michelle Morgante; Antoni Rafalski
Journal:  Theor Appl Genet       Date:  2004-08       Impact factor: 5.699

7.  Straightforward detection of SNPs in double-stranded DNA by using exonuclease III/nuclease S1/PNA system.

Authors:  Binzhi Ren; Jing-Min Zhou; Makoto Komiyama
Journal:  Nucleic Acids Res       Date:  2004-02-24       Impact factor: 16.971

8.  Allele-specific CAPS markers based on point mutations in resistance alleles at the pvr1 locus encoding eIF4E in Capsicum.

Authors:  Inhwa Yeam; Byoung-Cheorl Kang; Wouter Lindeman; James D Frantz; Nanne Faber; Molly M Jahn
Journal:  Theor Appl Genet       Date:  2005-11-09       Impact factor: 5.699

9.  Variation in crossing-over rates across chromosome 4 of Arabidopsis thaliana reveals the presence of meiotic recombination "hot spots".

Authors:  Jan Drouaud; Christine Camilleri; Pierre-Yves Bourguignon; Aurélie Canaguier; Aurélie Bérard; Daniel Vezon; Sandra Giancola; Dominique Brunel; Vincent Colot; Bernard Prum; Hadi Quesneville; Christine Mézard
Journal:  Genome Res       Date:  2005-12-12       Impact factor: 9.043

10.  Characterisation of single nucleotide polymorphisms in sugarcane ESTs.

Authors:  Giovanni M Cordeiro; Frances Eliott; C Lynne McIntyre; Rosanne E Casu; Robert J Henry
Journal:  Theor Appl Genet       Date:  2006-05-20       Impact factor: 5.699
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