Literature DB >> 11375977

An IgH enhancer that drives transcription through basic helix-loop-helix and Oct transcription factor binding motifs. Functional analysis of the E(mu)3' enhancer of the catfish.

C C Cioffi1, D L Middleton, M R Wilson, N W Miller, L W Clem, G W Warr.   

Abstract

The transcriptional enhancer (E(mu)3') of the IgH locus of the channel catfish, Ictalurus punctatus, shows strong B cell-specific activity and differs from the mammalian E(mu) enhancer in both location and structure. It occurs between the mu and delta genes and contains numerous transcription factor binding sites, predominantly octamer and muE5 motifs of consensus and variant sequences. It lacks the classical muA-muE3(CBF)-muB core array of binding motifs seen within mammalian IgH E(mu) enhancers. To determine the functionally important motifs, a series of mutant enhancers was created using sequence-targeted polymerase chain reaction. Whereas the mutation of consensus and variant octamer motifs (individually or in multiples) decreased enhancer function, mutation of a single consensus muE5 motif destroyed the function of this enhancer in mammalian plasmacytomas. Mutation of this consensus muE5 site, combined with mutations of certain octamer sites, destroyed function in catfish B cells. Experiments using artificial enhancers containing multimers of motifs or short regions of the native enhancer suggested that the minimal E(mu)3' enhancer (a) contains a consensus muE5 site and two octamer sites, (b) is B cell-specific, and (c) is active across species. The dependence of an Ig enhancer on sites that bind basic helix-loop-helix and Oct transcription factors has not previously been observed and confirms large differences in structure and function between fish and mammalian IgH enhancers.

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Year:  2001        PMID: 11375977     DOI: 10.1074/jbc.M100110200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  12 in total

1.  Analysis of multiple genomic sequence alignments: a web resource, online tools, and lessons learned from analysis of mammalian SCL loci.

Authors:  Michael A Chapman; Ian J Donaldson; James Gilbert; Darren Grafham; Jane Rogers; Anthony R Green; Berthold Göttgens
Journal:  Genome Res       Date:  2004-01-12       Impact factor: 9.043

2.  Patterns of gene divergence and VL promoter activity in immunoglobulin light chain clusters of the channel catfish.

Authors:  Julia Cay Jones; Seyed H Ghaffari; Craig J Lobb
Journal:  Immunogenetics       Date:  2004-09-03       Impact factor: 2.846

3.  Evolution of transcriptional enhancers in the immunoglobulin heavy-chain gene: functional characteristics of the zebrafish Emu3' enhancer.

Authors:  Kristofor K Ellestad; Brad G Magor
Journal:  Immunogenetics       Date:  2005-03-09       Impact factor: 2.846

4.  Function of E-protein dimers expressed in catfish lymphocytes.

Authors:  Jun-ichi Hikima; Mara L Lennard Richard; Melanie R Wilson; Norman W Miller; Gregory W Warr
Journal:  Mol Immunol       Date:  2007-09-17       Impact factor: 4.407

5.  Evolution of antibody class switching: identification and transcriptional control of an Inu exon in the duck (Anas platyrhynchos).

Authors:  Mats L Lundqvist; Bryan R McElveen; Darlene L Middleton; Robert Chapman; Gregory W Warr
Journal:  Dev Comp Immunol       Date:  2005-06-20       Impact factor: 3.636

6.  The zebrafish IgH locus contains multiple transcriptional regulatory regions.

Authors:  N Danilova; H L Saunders; K K Ellestad; B G Magor
Journal:  Dev Comp Immunol       Date:  2010-11-11       Impact factor: 3.636

7.  Regulation of immunoglobulin gene transcription in a teleost fish: identification, expression and functional properties of E2A in the channel catfish.

Authors:  Jun-ichi Hikima; Darlene L Middleton; Melanie R Wilson; Norman W Miller; L William Clem; Gregory W Warr
Journal:  Immunogenetics       Date:  2005-04-08       Impact factor: 2.846

8.  Conservation and divergence of the Emicro3' enhancer in the IGH locus of teleosts.

Authors:  Jun-Ichi Hikima; Mara L Lennard; Melanie R Wilson; Norman W Miller; L William Clem; Gregory W Warr
Journal:  Immunogenetics       Date:  2006-03-15       Impact factor: 2.846

9.  BOB.1 of the channel catfish, Ictalurus punctatus: not a transcriptional coactivator?

Authors:  Mara L Lennard Richard; Jun-ichi Hikima; Melanie R Wilson; Norman W Miller; Charles Cunningham; Gregory W Warr
Journal:  Mol Immunol       Date:  2008-11-28       Impact factor: 4.407

10.  Interaction between E-protein and Oct transcription factors in the function of the catfish IGH enhancer.

Authors:  Jun-Ichi Hikima; Mara L Lennard Richard; Melanie R Wilson; Norman W Miller; Gregory W Warr
Journal:  Dev Comp Immunol       Date:  2008-05-07       Impact factor: 3.636

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