Literature DB >> 11374997

Calculated and experimental NMR chemical shifts of p-menthane-3,9-diols. A combination of molecular dynamics and quantum mechanics to determine the structure and the solvent effects.

J Casanovas1, A M Namba, S León, G L Aquino, G V da Silva, C Alemán.   

Abstract

NMR chemical shifts have been experimentally measured and theoretically estimated for all the carbon atoms of (1R,3S,4S,8S)-p-menthane-3,9-diol in chloroform solution. Theoretical estimations were performed using a combination of molecular dynamics simulations and quantum mechanical calculations. Molecular dynamics simulations were used to obtain the most populated conformations of the (1R,3S:4S,8S)-p-menthane-3,9-diol as well as the distribution of the solvent molecules around it. Quantum mechanical calculations of NMR chemical shifts were performed on the most relevant conformations employing the GIAO-DFT formalism. A special emphasis was put in evaluating the effects of the surrounding solvent molecules. For this purpose, supermolecule calculations were performed on complexes constituted by the solute and n chloroform molecules, where n ranges from 3 to 16. An excellent agreement with experimental data has been obtained following this computational strategy.

Entities:  

Year:  2001        PMID: 11374997     DOI: 10.1021/jo0016982

Source DB:  PubMed          Journal:  J Org Chem        ISSN: 0022-3263            Impact factor:   4.354


  5 in total

1.  Molecular structure and vibrational and chemical shift assignments of 5-(2-Hydroxyphenyl)-4-(p-tolyl)-2,4-dihydro-1,2,4-triazole-3-thione by DFT and ab initio HF calculations.

Authors:  Muharrem Dinçer; Davut Avci; Mehmet Sekerci; Yusuf Atalay
Journal:  J Mol Model       Date:  2008-06-26       Impact factor: 1.810

2.  An experimental and theoretical approach to the molecular structure of 2-(4-[3-(2,5-dimethylphenyl)-3-methylcyclobutyl]thiazol-2-yl)isoindoline-1,3-dione.

Authors:  Namik Ozdemir; Muharrem Dinçer; Alaaddin Cukurovali
Journal:  J Mol Model       Date:  2009-07-12       Impact factor: 1.810

3.  Stereochemistry of complex marine natural products by quantum mechanical calculations of NMR chemical shifts: solvent and conformational effects on okadaic acid.

Authors:  Humberto J Domínguez; Guillermo D Crespín; Adrián J Santiago-Benítez; José A Gavín; Manuel Norte; José J Fernández; Antonio Hernández Daranas
Journal:  Mar Drugs       Date:  2014-01-07       Impact factor: 5.118

4.  An initial investigation of accuracy required for the identification of small molecules in complex samples using quantum chemical calculated NMR chemical shifts.

Authors:  Yasemin Yesiltepe; Niranjan Govind; Thomas O Metz; Ryan S Renslow
Journal:  J Cheminform       Date:  2022-09-22       Impact factor: 8.489

5.  An automated framework for NMR chemical shift calculations of small organic molecules.

Authors:  Yasemin Yesiltepe; Jamie R Nuñez; Sean M Colby; Dennis G Thomas; Mark I Borkum; Patrick N Reardon; Nancy M Washton; Thomas O Metz; Justin G Teeguarden; Niranjan Govind; Ryan S Renslow
Journal:  J Cheminform       Date:  2018-10-26       Impact factor: 5.514

  5 in total

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