Literature DB >> 11355343

Thermal effects on reverse transcription: improvement of accuracy and processivity in cDNA synthesis.

C M Malboeuf1, S J Isaacs, N H Tran, B Kim.   

Abstract

Reverse transcription, coupled with DNA amplification, has been widely used for molecular analysis of RNAs. Reverse transcriptases are retroviral DNA polymerases that can synthesize DNA from both RNA and DNA. In general, because of the lack of 3'-->5' exonuclease activity in retroviral reverse transcriptases, the reverse transcription step is error prone. Mutations created during the reverse transcription step of cDNA synthesis or RT-PCR are delivered to the final products to be analyzed, interfering with accurate analysis of the RNAs. In addition, because reverse transcription uses RNA as a template, processive DNA synthesis by reverse transcriptase is frequently interrupted by secondary structures of the RNA templates, causing difficulties in full-length cDNA synthesis. Here, we report that an increase in reaction temperature greatly enhances both the accuracy and the processivity of reverse transcription catalyzed by murine leukemia virus (MuLV) and human immunodeficiency virus type 1 (HIV-1) reverse transcriptases.

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Year:  2001        PMID: 11355343     DOI: 10.2144/01305rr06

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  20 in total

1.  Utility of linearly amplified RNA for RT-PCR detection of chromosomal translocations: validation using the t(2;5)(p23;q35) NPM-ALK chromosomal translocation.

Authors:  Jonathan A Schumacher; Stephen D Jenson; Kojo S J Elenitoba-Johnson; Megan S Lim
Journal:  J Mol Diagn       Date:  2004-02       Impact factor: 5.568

2.  A group II intron-type open reading frame from the thermophile Bacillus (Geobacillus) stearothermophilus encodes a heat-stable reverse transcriptase.

Authors:  Jaishree Vellore; Samuel E Moretz; Bert C Lampson
Journal:  Appl Environ Microbiol       Date:  2004-12       Impact factor: 4.792

3.  An abundant, truncated human sulfonylurea receptor 1 splice variant has prodiabetic properties and impairs sulfonylurea action.

Authors:  Diethart Schmid; Michael Stolzlechner; Albin Sorgner; Caterina Bentele; Alice Assinger; Peter Chiba; Thomas Moeslinger
Journal:  Cell Mol Life Sci       Date:  2011-06-14       Impact factor: 9.261

4.  Intrinsic DNA synthesis fidelity of xenotropic murine leukemia virus-related virus reverse transcriptase.

Authors:  Verónica Barrioluengo; Yi Wang; Stuart F J Le Grice; Luis Menéndez-Arias
Journal:  FEBS J       Date:  2012-03-16       Impact factor: 5.542

5.  Assays for precise quantification of total (including short) and elongated HIV-1 transcripts.

Authors:  Philipp Kaiser; Sunil K Joshi; Peggy Kim; Peilin Li; Hongbing Liu; Andrew P Rice; Joseph K Wong; Steven A Yukl
Journal:  J Virol Methods       Date:  2016-12-27       Impact factor: 2.014

6.  Mechanistic differences in RNA-dependent DNA polymerization and fidelity between murine leukemia virus and HIV-1 reverse transcriptases.

Authors:  Mark Skasko; Kellie K Weiss; Holly M Reynolds; Varuni Jamburuthugoda; Kwi Lee; Baek Kim
Journal:  J Biol Chem       Date:  2005-01-10       Impact factor: 5.157

7.  Biochemical characterization of enzyme fidelity of influenza A virus RNA polymerase complex.

Authors:  Shilpa Aggarwal; Birgit Bradel-Tretheway; Toru Takimoto; Stephen Dewhurst; Baek Kim
Journal:  PLoS One       Date:  2010-04-29       Impact factor: 3.240

8.  Macrophage tropism of HIV-1 depends on efficient cellular dNTP utilization by reverse transcriptase.

Authors:  Tracy L Diamond; Mikhail Roshal; Varuni K Jamburuthugoda; Holly M Reynolds; Aaron R Merriam; Kwi Y Lee; Mini Balakrishnan; Robert A Bambara; Vicente Planelles; Stephen Dewhurst; Baek Kim
Journal:  J Biol Chem       Date:  2004-09-26       Impact factor: 5.157

9.  The mechanistic architecture of thermostable Pyrococcus furiosus family B DNA polymerase motif A and its interaction with the dNTP substrate.

Authors:  Edward M Kennedy; Christopher Hergott; Stephen Dewhurst; Baek Kim
Journal:  Biochemistry       Date:  2009-12-01       Impact factor: 3.162

10.  Influence of vector design and host cell on the mechanism of recombination and emergence of mutant subpopulations of replicating retroviral vectors.

Authors:  Matthias Paar; Dieter Klein; Brian Salmons; Walter H Günzburg; Matthias Renner; Daniel Portsmouth
Journal:  BMC Mol Biol       Date:  2009-02-09       Impact factor: 2.946

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