Literature DB >> 11353837

In vitro evolution of a highly replicating, doxycycline-dependent HIV for applications in vaccine studies.

G Marzio1, K Verhoef, M Vink, B Berkhout.   

Abstract

A major concern associated with the use of vaccines based on live-attenuated viruses is the possible and well documented reversion to pathogenic phenotypes. In the case of HIV, genomic deletions or mutations introduced to attenuate viral pathogenicity can be repaired by selection of compensating mutations. These events lead to increased virus replication rates and, eventually, disease progression. Because replication competence and degree of protection appear to be directly correlated, further attenuation of a vaccine virus may compromise the ability to elicit a protective immune response. Here, we describe an approach toward a safe attenuated HIV vaccine. The system is not based on permanent reduction of infectivity by alteration of important viral genomic sequences, but on strict control of replication through the insertion of the tetracycline (Tet) system in the HIV genome. Furthermore, extensive in vitro evolution was applied to the prototype Tet-controlled HIV to select for variants with optimized rather than diminished replication capacity. The final product of evolution has properties uniquely suited for use as a vaccine strain. The evolved virus is highly infectious, as opposed to a canonically attenuated virus. It replicates efficiently in T cell lines and in activated and unstimulated peripheral blood mononuclear cells. Most importantly, replication is strictly dependent on the nontoxic Tetanalogue doxycycline and can be turned on and off. These results suggest that this in vitro evolved, doxycycline-dependent HIV might represent a useful tool toward the development of a safer, live-attenuated HIV vaccine.

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Year:  2001        PMID: 11353837      PMCID: PMC33470          DOI: 10.1073/pnas.111031498

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

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Journal:  Nat Med       Date:  1998-06       Impact factor: 53.440

Review 4.  Doxycycline revisited.

Authors:  N Joshi; D Q Miller
Journal:  Arch Intern Med       Date:  1997-07-14

5.  Resistance of neonatal monkeys to live attenuated vaccine strains of simian immunodeficiency virus.

Authors:  M S Wyand; K H Manson; A A Lackner; R C Desrosiers
Journal:  Nat Med       Date:  1997-01       Impact factor: 53.440

6.  A conserved hairpin motif in the R-U5 region of the human immunodeficiency virus type 1 RNA genome is essential for replication.

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Journal:  J Virol       Date:  1997-03       Impact factor: 5.103

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Journal:  J Virol       Date:  1997-05       Impact factor: 5.103

8.  Protection by live, attenuated simian immunodeficiency virus against heterologous challenge.

Authors:  M S Wyand; K Manson; D C Montefiori; J D Lifson; R P Johnson; R C Desrosiers
Journal:  J Virol       Date:  1999-10       Impact factor: 5.103

9.  Vaccine protection by a triple deletion mutant of simian immunodeficiency virus.

Authors:  M S Wyand; K H Manson; M Garcia-Moll; D Montefiori; R C Desrosiers
Journal:  J Virol       Date:  1996-06       Impact factor: 5.103

10.  Switching transgene expression in the brain using an adenoviral tetracycline-regulatable system.

Authors:  T C Harding; B J Geddes; D Murphy; D Knight; J B Uney
Journal:  Nat Biotechnol       Date:  1998-06       Impact factor: 54.908

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  38 in total

1.  eCodonOpt: a systematic computational framework for optimizing codon usage in directed evolution experiments.

Authors:  Gregory L Moore; Costas D Maranas
Journal:  Nucleic Acids Res       Date:  2002-06-01       Impact factor: 16.971

Review 2.  HIV-1 evolution: frustrating therapies, but disclosing molecular mechanisms.

Authors:  Atze T Das; Ben Berkhout
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-06-27       Impact factor: 6.237

3.  A doxycycline-dependent human immunodeficiency virus type 1 replicates in vivo without inducing CD4+ T-cell depletion.

Authors:  Nicolas Legrand; Gisela J van der Velden; Raphaël Ho Tsong Fang; Marc Douaisi; Kees Weijer; Atze T Das; Bianca Blom; Christel H Uittenbogaart; Ben Berkhout; Mireille Centlivre
Journal:  J Gen Virol       Date:  2012-05-30       Impact factor: 3.891

4.  Construction of a doxycycline-dependent simian immunodeficiency virus reveals a nontranscriptional function of tat in viral replication.

Authors:  Atze T Das; Bep Klaver; Alex Harwig; Monique Vink; Marcel Ooms; Mireille Centlivre; Ben Berkhout
Journal:  J Virol       Date:  2007-08-01       Impact factor: 5.103

Review 5.  Laboratory-directed protein evolution.

Authors:  Ling Yuan; Itzhak Kurek; James English; Robert Keenan
Journal:  Microbiol Mol Biol Rev       Date:  2005-09       Impact factor: 11.056

6.  IPRO: an iterative computational protein library redesign and optimization procedure.

Authors:  Manish C Saraf; Gregory L Moore; Nina M Goodey; Vania Y Cao; Stephen J Benkovic; Costas D Maranas
Journal:  Biophys J       Date:  2006-03-02       Impact factor: 4.033

7.  The HIV-1 Tat protein has a versatile role in activating viral transcription.

Authors:  Atze T Das; Alex Harwig; Ben Berkhout
Journal:  J Virol       Date:  2011-07-13       Impact factor: 5.103

8.  EBV LMP1, a viral mimic of CD40, activates dendritic cells and functions as a molecular adjuvant when incorporated into an HIV vaccine.

Authors:  Sachin Gupta; James M Termini; Liguo Niu; Saravana K Kanagavelu; Helena Schmidtmayerova; Victoria Snarsky; Richard S Kornbluth; Geoffrey W Stone
Journal:  J Leukoc Biol       Date:  2011-05-17       Impact factor: 4.962

9.  Design and in vivo characterization of self-inactivating human and non-human lentiviral expression vectors engineered for streptogramin-adjustable transgene expression.

Authors:  Barbara Mitta; Cornelia C Weber; Markus Rimann; Martin Fussenegger
Journal:  Nucleic Acids Res       Date:  2004-07-16       Impact factor: 16.971

10.  A novel approach for inhibition of HIV-1 by RNA interference: counteracting viral escape with a second generation of siRNAs.

Authors:  Olivier ter Brake; Ben Berkhout
Journal:  J RNAi Gene Silencing       Date:  2005-10-14
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