Literature DB >> 11341838

Water penetration and binding to ferric myoglobin.

W Cao1, J F Christian, P M Champion, F Rosca, J T Sage.   

Abstract

Flash photolysis investigations of horse heart metmyoglobin bound with NO (Mb(3+)NO) reveal the kinetics of water entry and binding to the heme iron. Photodissociation of NO leaves the sample in the dehydrated Mb(3+) (5-coordinate) state. After NO photolysis and escape, a water molecule enters the heme pocket and binds to the heme iron, forming the 6-coordinate aquometMb state (Mb(3+)H2O). At longer times, NO displaces the H2O ligand to reestablish equilibrium. At 293 K, we determine a value k(w) approximately 5.7 x 10(6) s(-1) for the rate of H2O binding and estimate the H2O dissociation constant as 60 mM. The Arrhenius barrier height H(w) = 42 +/- 3 kJ/mol determined for H2O binding is identical to the barrier for CO escape after photolysis of Mb(2+)CO, within experimental uncertainty, consistent with a common mechanism for entry and exit of small molecules from the heme pocket. We propose that both processes are gated by displacement of His-64 from the heme pocket. We also observe that the bimolecular NO rebinding rate is enhanced by 3 orders of magnitude both for the H64L mutant, which does not bind water, and for the H64G mutant, where the bound water is no longer stabilized by hydrogen bonding with His-64. These results emphasize the importance of the hydrogen bond in stabilizing H2O binding and thus preventing NO scavenging by ferric heme proteins at physiological NO concentrations.

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Year:  2001        PMID: 11341838     DOI: 10.1021/bi010067e

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  27 in total

1.  Time-resolved visible and infrared study of the cyano complexes of myoglobin and of hemoglobin I from Lucina pectinata.

Authors:  Jan Helbing; Luigi Bonacina; Ruth Pietri; Jens Bredenbeck; Peter Hamm; Frank van Mourik; Frédéric Chaussard; Alejandro Gonzalez-Gonzalez; Majed Chergui; Cacimar Ramos-Alvarez; Carlos Ruiz; Juan López-Garriga
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

2.  Water and ligand entry in myoglobin: assessing the speed and extent of heme pocket hydration after CO photodissociation.

Authors:  Robert A Goldbeck; Shyam Bhaskaran; Cheri Ortega; Juan L Mendoza; John S Olson; Jayashree Soman; David S Kliger; Raymond M Esquerra
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-23       Impact factor: 11.205

Review 3.  Ligand recombination and a hierarchy of solvent slaved dynamics: the origin of kinetic phases in hemeproteins.

Authors:  Uri Samuni; David Dantsker; Camille J Roche; Joel M Friedman
Journal:  Gene       Date:  2007-05-10       Impact factor: 3.688

4.  Role of flexibility and polarity as determinants of the hydration of internal cavities and pockets in proteins.

Authors:  Ana Damjanović; Jamie L Schlessman; Carolyn A Fitch; Angel E García; Bertrand García-Moreno E
Journal:  Biophys J       Date:  2007-06-29       Impact factor: 4.033

5.  Coherence spectroscopy investigations of the low-frequency vibrations of heme: effects of protein-specific perturbations.

Authors:  Flaviu Gruia; Minoru Kubo; Xiong Ye; Dan Ionascu; Changyuan Lu; Robert K Poole; Syun-Ru Yeh; Paul M Champion
Journal:  J Am Chem Soc       Date:  2008-03-20       Impact factor: 15.419

6.  The pH dependence of heme pocket hydration and ligand rebinding kinetics in photodissociated carbonmonoxymyoglobin.

Authors:  Raymond M Esquerra; Russell A Jensen; Shyam Bhaskaran; Marlisa L Pillsbury; Juan L Mendoza; Benjamin W Lintner; David S Kliger; Robert A Goldbeck
Journal:  J Biol Chem       Date:  2008-03-20       Impact factor: 5.157

7.  Ligand binding to truncated hemoglobin N from Mycobacterium tuberculosis is strongly modulated by the interplay between the distal heme pocket residues and internal water.

Authors:  Yannick H Ouellet; Richard Daigle; Patrick Lagüe; David Dantsker; Mario Milani; Martino Bolognesi; Joel M Friedman; Michel Guertin
Journal:  J Biol Chem       Date:  2008-08-02       Impact factor: 5.157

8.  Role of Heme Pocket Water in Allosteric Regulation of Ligand Reactivity in Human Hemoglobin.

Authors:  Raymond M Esquerra; Bushra M Bibi; Pooncharas Tipgunlakant; Ivan Birukou; Jayashree Soman; John S Olson; David S Kliger; Robert A Goldbeck
Journal:  Biochemistry       Date:  2016-07-13       Impact factor: 3.162

9.  Functional consequences of the open distal pocket of dehaloperoxidase-hemoglobin observed by time-resolved X-ray crystallography.

Authors:  Junjie Zhao; Vukica Srajer; Stefan Franzen
Journal:  Biochemistry       Date:  2013-10-28       Impact factor: 3.162

10.  Insight of endo-1,4-xylanase II from Trichoderma reesei: conserved water-mediated H-bond and ion pairs interactions.

Authors:  Balakrishnan Vijayakumar; Devadasan Velmurugan
Journal:  Protein J       Date:  2013-12       Impact factor: 2.371

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