Literature DB >> 11334635

ANTHEPROT: an integrated protein sequence analysis software with client/server capabilities.

G Deléage1, C Combet, C Blanchet, C Geourjon.   

Abstract

Programs devoted to the analysis of protein sequences exist either as stand-alone programs or as Web servers. However, stand-alone programs can hardly accommodate for the analysis that involves comparisons on databanks, which require regular updates. Moreover, Web servers cannot be as efficient as stand-alone programs when dealing with real-time graphic display. We describe here a stand-alone software program called ANTHEPROT, which is intended to perform protein sequence analysis with a high integration level and clients/server capabilities. It is an interactive program with a graphical user interface that allows handling of protein sequence and data in a very interactive and convenient manner. It provides many methods and tools, which are integrated into a graphical user interface. ANTHEPROT is available for Windows-based systems. It is able to connect to a Web server in order to perform large-scale sequence comparison on up-to-date databanks. ANTHEPROT is freely available to academic users and may be downloaded at http://pbil.ibcp.fr/ANTHEPROT.

Mesh:

Year:  2001        PMID: 11334635     DOI: 10.1016/s0010-4825(01)00008-7

Source DB:  PubMed          Journal:  Comput Biol Med        ISSN: 0010-4825            Impact factor:   4.589


  42 in total

1.  Conservation of the conformation and positive charges of hepatitis C virus E2 envelope glycoprotein hypervariable region 1 points to a role in cell attachment.

Authors:  F Penin; C Combet; G Germanidis; P O Frainais; G Deléage; J M Pawlotsky
Journal:  J Virol       Date:  2001-06       Impact factor: 5.103

2.  Molecular origins for the dominant negative function of human glucocorticoid receptor beta.

Authors:  Matthew R Yudt; Christine M Jewell; Rachelle J Bienstock; John A Cidlowski
Journal:  Mol Cell Biol       Date:  2003-06       Impact factor: 4.272

3.  Integrated databanks access and sequence/structure analysis services at the PBIL.

Authors:  Guy Perrière; Christophe Combet; Simon Penel; Christophe Blanchet; Jean Thioulouse; Christophe Geourjon; Julien Grassot; Céline Charavay; Manolo Gouy; Laurent Duret; Gilbert Deléage
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

4.  Molecular characterization and phylogenetic analysis of a yak (Bos grunniens) κ-casein cDNA from lactating mammary gland.

Authors:  W L Bai; R H Yin; Q L Dou; W Q Jiang; S J Zhao; Z J Ma; G B Luo; Z H Zhao
Journal:  Mol Biol Rep       Date:  2010-11-20       Impact factor: 2.316

5.  Evidence that insertion of Tomato ringspot nepovirus NTB-VPg protein in endoplasmic reticulum membranes is directed by two domains: a C-terminal transmembrane helix and an N-terminal amphipathic helix.

Authors:  Shuo Cheng Zhang; Guangzhi Zhang; Lanying Yang; Joan Chisholm; Hélène Sanfaçon
Journal:  J Virol       Date:  2005-09       Impact factor: 5.103

6.  Characterization of membrane association domains within the Tomato ringspot nepovirus X2 protein, an endoplasmic reticulum-targeted polytopic membrane protein.

Authors:  Guangzhi Zhang; Hélène Sanfaçon
Journal:  J Virol       Date:  2006-08-23       Impact factor: 5.103

7.  Computational prediction and experimental assessment of secreted/surface proteins from Mycobacterium tuberculosis H37Rv.

Authors:  Carolina Vizcaíno; Daniel Restrepo-Montoya; Diana Rodríguez; Luis F Niño; Marisol Ocampo; Magnolia Vanegas; María T Reguero; Nora L Martínez; Manuel E Patarroyo; Manuel A Patarroyo
Journal:  PLoS Comput Biol       Date:  2010-06-24       Impact factor: 4.475

8.  A 176 amino acid polypeptide derived from the mumps virus HN ectodomain shows immunological and biological properties similar to the HN protein.

Authors:  Emma Herrera; Patricia Barcenas; Rubicela Hernández; Alfonso Méndez; Guillermo Pérez-Ishiwara; Blanca Barrón
Journal:  Virol J       Date:  2010-08-20       Impact factor: 4.099

9.  Food source affects the expression of vitellogenin and fecundity of a biological control agent, Neoseiulus cucumeris.

Authors:  Yunlong Zhao; Dunsong Li; Min Zhang; Wei Chen; Guren Zhang
Journal:  Exp Appl Acarol       Date:  2014-02-27       Impact factor: 2.132

10.  Mutation analysis of congenital cataract in a Basotho family identified a new missense allele in CRYBB2.

Authors:  Maneo Emily Mothobi; Shuren Guo; Yuanyuan Liu; Qiang Chen; Ali Said Yussuf; Xinli Zhu; Zheng Fang
Journal:  Mol Vis       Date:  2009-07-30       Impact factor: 2.367

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