Literature DB >> 11321584

A web-based program for the prediction of average hydropathy, average amphipathicity and average similarity of multiply aligned homologous proteins.

Y Zhai1, M H Saier.   

Abstract

We designed a web-based program, AveHAS, to determine and plot the average hydropathy, average amphipathicity and average similarity for a clustal X-derived multiple alignment of homologous protein sequences. This method is based on the TREEMOMENT and Hydro programs. It has a user-friendly interface, a convenient input format and an improved algorithm.

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Year:  2001        PMID： 11321584

Source DB:  PubMed          Journal:  J Mol Microbiol Biotechnol        ISSN： 1464-1801


  35 in total

1.  Bioinformatic characterization of the trimeric intracellular cation-specific channel protein family.

Authors:  Abe L F Silverio; Milton H Saier
Journal:  J Membr Biol       Date:  2011-04-26       Impact factor: 1.843

2.  The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes.

Authors:  Yufeng Zhai; Milton H Saier
Journal:  Protein Sci       Date:  2002-09       Impact factor: 6.725

3.  Sequence and phylogenetic analyses of 4 TMS junctional proteins of animals: connexins, innexins, claudins and occludins.

Authors:  V B Hua; A B Chang; J H Tchieu; N M Kumar; P A Nielsen; M H Saier
Journal:  J Membr Biol       Date:  2003-07-01       Impact factor: 1.843

Review 4.  Type V protein secretion pathway: the autotransporter story.

Authors:  Ian R Henderson; Fernando Navarro-Garcia; Mickaël Desvaux; Rachel C Fernandez; Dlawer Ala'Aldeen
Journal:  Microbiol Mol Biol Rev       Date:  2004-12       Impact factor: 11.056

Review 5.  Protein-translocating trimeric autotransporters of gram-negative bacteria.

Authors:  David S H Kim; Yi Chao; Milton H Saier
Journal:  J Bacteriol       Date:  2006-08       Impact factor: 3.490

Review 6.  Gap junctional proteins of animals: the innexin/pannexin superfamily.

Authors:  Ming Ren Yen; Milton H Saier
Journal:  Prog Biophys Mol Biol       Date:  2007-03-15       Impact factor: 3.667

Review 7.  Bioinformatic analyses of transmembrane transport: novel software for deducing protein phylogeny, topology, and evolution.

Authors:  Ming Ren Yen; Jeehye Choi; Milton H Saier
Journal:  J Mol Microbiol Biotechnol       Date:  2009-09-18

8.  Animal Ca2+ release-activated Ca2+ (CRAC) channels appear to be homologous to and derived from the ubiquitous cation diffusion facilitators.

Authors:  Madeleine G Matias; Kenny M Gomolplitinant; Dorjee G Tamang; Milton H Saier
Journal:  BMC Res Notes       Date:  2010-06-03

9.  The Transporter Classification Database: recent advances.

Authors:  Milton H Saier; Ming Ren Yen; Keith Noto; Dorjee G Tamang; Charles Elkan
Journal:  Nucleic Acids Res       Date:  2008-11-20       Impact factor: 16.971

10.  State-dependent block of Na+ channels by articaine via the local anesthetic receptor.

Authors:  Ging Kuo Wang; Joanna Calderon; Shiow-Jiin Jaw; Sho-Ya Wang
Journal:  J Membr Biol       Date:  2009-05-06       Impact factor: 1.843
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