Literature DB >> 11312321

"Rule of six": how does the Sendai virus RNA polymerase keep count?

D Vulliémoz1, L Roux.   

Abstract

The "rule of six" stipulates that the Paramyxovirus RNA polymerase efficiently replicates only viral genomes counting 6n + 0 nucleotides. Because the nucleocapsid proteins (N) interact with 6 nucleotides, an exact nucleotide-N match at the RNA 3'-OH end (3'-OH congruence) may be required for recognition of an active replication promoter. Alternatively, assuming that the six positions for the interaction of N with the nucleotides are not equivalent, the nucleotide position relative to N may be critical (N phase context). The replication abilities of various minireplicons, designed so that the 3'-OH congruence could be discriminated from the N phase context, were studied. The results strongly suggest that the application of the rule of six depends on the recognition of nucleotides positioned in the proper N phase context.

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Year:  2001        PMID: 11312321      PMCID: PMC114204          DOI: 10.1128/JVI.75.10.4506-4518.2001

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  59 in total

Review 1.  Recovery of negative-strand RNA viruses from plasmid DNAs: a positive approach revitalizes a negative field.

Authors:  A Roberts; J K Rose
Journal:  Virology       Date:  1998-07-20       Impact factor: 3.616

2.  The activity of Sendai virus genomic and antigenomic promoters requires a second element past the leader template regions: a motif (GNNNNN)3 is essential for replication.

Authors:  C Tapparel; D Maurice; L Roux
Journal:  J Virol       Date:  1998-04       Impact factor: 5.103

3.  Inhibition of Sendai virus genome replication due to promoter-increased selectivity: a possible role for the accessory C proteins.

Authors:  C Tapparel; S Hausmann; T Pelet; J Curran; D Kolakofsky; L Roux
Journal:  J Virol       Date:  1997-12       Impact factor: 5.103

4.  Recovery of infectious SV5 from cloned DNA and expression of a foreign gene.

Authors:  B He; R G Paterson; C D Ward; R A Lamb
Journal:  Virology       Date:  1997-10-27       Impact factor: 3.616

Review 5.  Paramyxovirus RNA synthesis and the requirement for hexamer genome length: the rule of six revisited.

Authors:  D Kolakofsky; T Pelet; D Garcin; S Hausmann; J Curran; L Roux
Journal:  J Virol       Date:  1998-02       Impact factor: 5.103

6.  Isolation and characterization of vesicular stomatitis virus PoIR revertants: polymerase readthrough of the leader-N gene junction is linked to an ATP-dependent function.

Authors:  J L Chuang; R L Jackson; J Perrault
Journal:  Virology       Date:  1997-03-03       Impact factor: 3.616

7.  Minimum protein requirements for transcription and RNA replication of a minigenome of human parainfluenza virus type 3 and evaluation of the rule of six.

Authors:  A P Durbin; J W Siew; B R Murphy; P L Collins
Journal:  Virology       Date:  1997-07-21       Impact factor: 3.616

8.  An infectious clone of human parainfluenza virus type 3.

Authors:  M A Hoffman; A K Banerjee
Journal:  J Virol       Date:  1997-06       Impact factor: 5.103

9.  Recovery of infectious human parainfluenza virus type 3 from cDNA.

Authors:  A P Durbin; S L Hall; J W Siew; S S Whitehead; P L Collins; B R Murphy
Journal:  Virology       Date:  1997-09-01       Impact factor: 3.616

10.  The length and sequence composition of vesicular stomatitis virus intergenic regions affect mRNA levels and the site of transcript initiation.

Authors:  E A Stillman; M A Whitt
Journal:  J Virol       Date:  1998-07       Impact factor: 5.103

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  22 in total

1.  Polyploid measles virus with hexameric genome length.

Authors:  Monika Rager; Sompong Vongpunsawad; William Paul Duprex; Roberto Cattaneo
Journal:  EMBO J       Date:  2002-05-15       Impact factor: 11.598

2.  Given the opportunity, the Sendai virus RNA-dependent RNA polymerase could as well enter its template internally.

Authors:  Diane Vulliémoz; Laurent Roux
Journal:  J Virol       Date:  2002-08       Impact factor: 5.103

3.  Competition between the Sendai virus N mRNA start site and the genome 3'-end promoter for viral RNA polymerase.

Authors:  Philippe Le Mercier; Dominique Garcin; Eduardo Garcia; Daniel Kolakofsky
Journal:  J Virol       Date:  2003-09       Impact factor: 5.103

4.  Chemical modification of nucleotide bases and mRNA editing depend on hexamer or nucleoprotein phase in Sendai virus nucleocapsids.

Authors:  Frédéric Iseni; Florence Baudin; Dominique Garcin; Jean-Baptiste Marq; Rob W H Ruigrok; Daniel Kolakofsky
Journal:  RNA       Date:  2002-08       Impact factor: 4.942

5.  Ebolavirus polymerase uses an unconventional genome replication mechanism.

Authors:  Laure R Deflubé; Tessa N Cressey; Adam J Hume; Judith Olejnik; Elaine Haddock; Friederike Feldmann; Hideki Ebihara; Rachel Fearns; Elke Mühlberger
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-08       Impact factor: 11.205

6.  Evidence that the respiratory syncytial virus polymerase is recruited to nucleotides 1 to 11 at the 3' end of the nucleocapsid and can scan to access internal signals.

Authors:  Vanessa M Cowton; Rachel Fearns
Journal:  J Virol       Date:  2005-09       Impact factor: 5.103

7.  Evidence that the polymerase of respiratory syncytial virus initiates RNA replication in a nontemplated fashion.

Authors:  Sarah L Noton; Vanessa M Cowton; Chadene R Zack; David R McGivern; Rachel Fearns
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-17       Impact factor: 11.205

8.  Analysis of nucleotides 13-96 of the human parainfluenza virus type 3 antigenomic promoter reveals positive- and negative-acting replication elements.

Authors:  Jill R Gander; LeeAnne M Schwan; Michael A Hoffman
Journal:  Virology       Date:  2011-08-30       Impact factor: 3.616

Review 9.  Polymerases of paramyxoviruses and pneumoviruses.

Authors:  Rachel Fearns; Richard K Plemper
Journal:  Virus Res       Date:  2017-01-16       Impact factor: 3.303

10.  The genome length of human parainfluenza virus type 2 follows the rule of six, and recombinant viruses recovered from non-polyhexameric-length antigenomic cDNAs contain a biased distribution of correcting mutations.

Authors:  Mario H Skiadopoulos; Leatrice Vogel; Jeffrey M Riggs; Sonja R Surman; Peter L Collins; Brian R Murphy
Journal:  J Virol       Date:  2003-01       Impact factor: 5.103

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