Literature DB >> 11311820

Online reference database of European Y-chromosomal short tandem repeat (STR) haplotypes.

L Roewer1, M Krawczak, S Willuweit, M Nagy, C Alves, A Amorim, K Anslinger, C Augustin, A Betz, E Bosch, A Cagliá, A Carracedo, D Corach, A F Dekairelle, T Dobosz, B M Dupuy, S Füredi, C Gehrig, L Gusmaõ, J Henke, L Henke, M Hidding, C Hohoff, B Hoste, M A Jobling, H J Kärgel, P de Knijff, R Lessig, E Liebeherr, M Lorente, B Martínez-Jarreta, P Nievas, M Nowak, W Parson, V L Pascali, G Penacino, R Ploski, B Rolf, A Sala, U Schmidt, C Schmitt, P M Schneider, R Szibor, J Teifel-Greding, M Kayser.   

Abstract

The reference database of highly informative Y-chromosomal short tandem repeat (STR) haplotypes (YHRD), available online at http://ystr.charite.de, represents the largest collection of male-specific genetic profiles currently available for European populations. By September 2000, YHRD contained 4688 9-locus (so-called "minimal") haplotypes, 40% of which have been extended further to include two additional loci. Establishment of YHRD has been facilitated by the joint efforts of 31 forensic and anthropological institutions. All contributing laboratories have agreed to standardize their Y-STR haplotyping protocols and to participate in a quality assurance exercise prior to the inclusion of any data. In view of its collaborative character, and in order to put YHRD to its intended use, viz. the support of forensic caseworkers in their routine decision-making process, the database has been made publicly available via the Internet in February 2000. Online searches for complete or partial Y-STR haplotypes from evidentiary or non-probative material can be performed on a non-commercial basis, and yield observed haplotype counts as well as extrapolated population frequency estimates. In addition, the YHRD website provides information about the quality control test, genotyping protocols, haplotype formats and informativity, population genetic analysis, literature references, and a list of contact addresses of the contributing laboratories.

Mesh:

Year:  2001        PMID: 11311820     DOI: 10.1016/s0379-0738(00)00478-3

Source DB:  PubMed          Journal:  Forensic Sci Int        ISSN: 0379-0738            Impact factor:   2.395


  48 in total

1.  Y chromosome STR haplotypes and the genetic structure of U.S. populations of African, European, and Hispanic ancestry.

Authors:  Manfred Kayser; Silke Brauer; Hiltrud Schädlich; Mechthild Prinz; Mark A Batzer; Peter A Zimmerman; B A Boatin; Mark Stoneking
Journal:  Genome Res       Date:  2003-04       Impact factor: 9.043

2.  Y-chromosomal STR haplotypes in a population sample from southwest Germany (Freiburg area).

Authors:  Ulrike Schmidt; Nicola Meier; Sabine Lutz
Journal:  Int J Legal Med       Date:  2003-07-01       Impact factor: 2.686

3.  Significance of micro-geographical population structure in forensic cases: a bayesian exploration.

Authors:  María T Zarrabeitia; José A Riancho; María V Lareu; Francisco Leyva-Cobián; Angel Carracedo
Journal:  Int J Legal Med       Date:  2003-07-15       Impact factor: 2.686

Review 4.  Use of X-linked markers for forensic purposes.

Authors:  R Szibor; M Krawczak; S Hering; J Edelmann; E Kuhlisch; D Krause
Journal:  Int J Legal Med       Date:  2003-02-15       Impact factor: 2.686

5.  A comprehensive survey of human Y-chromosomal microsatellites.

Authors:  Manfred Kayser; Ralf Kittler; Axel Erler; Minttu Hedman; Andrew C Lee; Aisha Mohyuddin; S Qasim Mehdi; Zoë Rosser; Mark Stoneking; Mark A Jobling; Antti Sajantila; Chris Tyler-Smith
Journal:  Am J Hum Genet       Date:  2004-06       Impact factor: 11.025

6.  Duplication of DYS19 flanking regions in other parts of the Y chromosome.

Authors:  John M Butler; Richard Schoske
Journal:  Int J Legal Med       Date:  2004-04-07       Impact factor: 2.686

7.  Separate analysis of DYS385a and b versus conventional DYS385 typing: is there forensic relevance?

Authors:  Harald Niederstätter; Burkhard Berger; Herbert Oberacher; Anita Brandstätter; Christian G Huber; Walther Parson
Journal:  Int J Legal Med       Date:  2004-04-08       Impact factor: 2.686

8.  Y-STR diversity in the Himalayas.

Authors:  Tenzin Gayden; Shilpa Chennakrishnaiah; Joel La Salvia; Sacha Jimenez; Maria Regueiro; Trisha Maloney; Patrice J Persad; Areej Bukhari; Annabel Perez; Oliver Stojkovic; Rene J Herrera
Journal:  Int J Legal Med       Date:  2010-07-21       Impact factor: 2.686

9.  A genetic investigation of Korean mummies from the Joseon Dynasty.

Authors:  Na Young Kim; Hwan Young Lee; Myung Jin Park; Woo Ick Yang; Kyoung-Jin Shin
Journal:  Mol Biol Rep       Date:  2010-03-21       Impact factor: 2.316

10.  Diversity of five novel Y-STR loci and their application in studies of north Chinese populations.

Authors:  Zhaoyang Xu; Haiming Sun; Yang Yu; Yan Jin; Xaingning Meng; Donglin Sun; Jing Bai; Feng Chen; Songbin Fu
Journal:  J Genet       Date:  2010-04       Impact factor: 1.166

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