Literature DB >> 11300777

15N NMR relaxation studies of backbone dynamics in free and steroid-bound Delta 5-3-ketosteroid isomerase from Pseudomonas testosteroni.

S Yun1, D S Jang, D H Kim, K Y Choi, H C Lee.   

Abstract

The backbone dynamics of Delta(5)-3-ketosteroid isomerase (KSI) from Pseudomonas testosteroni has been studied in free enzyme and its complex with a steroid ligand, 19-nortestosterone hemisuccinate (19-NTHS), by (15)N relaxation measurements. The relaxation data were analyzed using the model-free formalism to extract the model-free parameters (S(2), tau(e), and R(ex)) and the overall rotational correlation time (tau(m)). The rotational correlation times were 19.23 +/- 0.08 and 17.08 +/- 0.07 ns with the diffusion anisotropies (D( parallel)/D( perpendicular)) of 1.26 +/- 0.03 and 1.25 +/- 0.03 for the free and steroid-bound KSI, respectively. The binding of 19-NTHS to free KSI causes a slight increase in the order parameters (S(2)) for a number of residues, which are located mainly in helix A1 and strand B4. However, the majority of the residues exhibit reduced order parameters upon ligand binding. In particular, strands B3, B5, and B6, which have most of the residues involved in the dimer interaction, have the reduced order parameters in the steroid-bound KSI, indicating the increased high-frequency (pico- to nanosecond) motions in the intersubunit region of this homodimeric enzyme. Our results differ from those of previous studies on the backbone dynamics of monomeric proteins, in which high-frequency internal motions are typically restricted upon ligand binding.

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Year:  2001        PMID: 11300777     DOI: 10.1021/bi0023192

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  5 in total

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Journal:  Biophys J       Date:  2006-02-24       Impact factor: 4.033

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Authors:  Neil R Syme; Caitriona Dennis; Agnieszka Bronowska; Guido C Paesen; Steve W Homans
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Authors:  Do Soo Jang; Hyung Jin Cha; Sun-Shin Cha; Bee Hak Hong; Nam-Chul Ha; Ja Young Lee; Byung-Ha Oh; Heung-Soo Lee; Kwan Yong Choi
Journal:  Biochem J       Date:  2004-09-15       Impact factor: 3.857

4.  Configurational entropy in protein-peptide binding: computational study of Tsg101 ubiquitin E2 variant domain with an HIV-derived PTAP nonapeptide.

Authors:  Benjamin J Killian; Joslyn Yudenfreund Kravitz; Sandeep Somani; Paramita Dasgupta; Yuan-Ping Pang; Michael K Gilson
Journal:  J Mol Biol       Date:  2009-04-09       Impact factor: 5.469

5.  Global changes in local protein dynamics reduce the entropic cost of carbohydrate binding in the arabinose-binding protein.

Authors:  Christopher A MacRaild; Antonio Hernández Daranas; Agnieszka Bronowska; Steve W Homans
Journal:  J Mol Biol       Date:  2007-02-22       Impact factor: 5.469

  5 in total

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