Literature DB >> 11289884

Hairpin formation and elongation of biomolecules.

A Montanari1, M Mézard.   

Abstract

We introduce a model of thermalized conformations in space of RNA-or single stranded DNA-molecules, which includes the possibility of hairpin formation. This model contains the usual secondary structure information, but extends it to the study of one element of the ternary structure, namely the end-to-end distance. The computed force-elongation characteristics are in good agreement with some recent measurements on single stranded DNA molecules.

Mesh:

Substances:

Year:  2001        PMID: 11289884     DOI: 10.1103/PhysRevLett.86.2178

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  21 in total

1.  Force-induced denaturation of RNA.

Authors:  U Gerland; R Bundschuh; T Hwa
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

2.  A semiflexible polymer model applied to loop formation in DNA hairpins.

Authors:  S V Kuznetsov; Y Shen; A S Benight; A Ansari
Journal:  Biophys J       Date:  2001-11       Impact factor: 4.033

3.  Mechanically probing the folding pathway of single RNA molecules.

Authors:  Ulrich Gerland; Ralf Bundschuh; Terence Hwa
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

4.  Dynamics of the DNA duplex formation studied by single molecule force measurements.

Authors:  U Bockelmann; P Thomen; F Heslot
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

5.  Probing single-stranded DNA conformational flexibility using fluorescence spectroscopy.

Authors:  M C Murphy; Ivan Rasnik; Wei Cheng; Timothy M Lohman; Taekjip Ha
Journal:  Biophys J       Date:  2004-04       Impact factor: 4.033

6.  Probing complex RNA structures by mechanical force.

Authors:  S Harlepp; T Marchal; J Robert; J-F Léger; A Xayaphoummine; H Isambert; D Chatenay
Journal:  Eur Phys J E Soft Matter       Date:  2003-12       Impact factor: 1.890

7.  Pause point spectra in DNA constant-force unzipping.

Authors:  J D Weeks; J B Lucks; Y Kafri; C Danilowicz; D R Nelson; M Prentiss
Journal:  Biophys J       Date:  2005-02-04       Impact factor: 4.033

8.  Force unfolding single RNAs.

Authors:  Fei Liu; Huan Tong; Zhong-Can Ou-Yang
Journal:  Biophys J       Date:  2005-12-30       Impact factor: 4.033

9.  Folding thermodynamics of pseudoknotted chain conformations.

Authors:  Zoia Kopeikin; Shi-Jie Chen
Journal:  J Chem Phys       Date:  2006-04-21       Impact factor: 3.488

10.  Dynamics of intramolecular recognition: base-pairing in DNA/RNA near and far from equilibrium.

Authors:  R Bundschuh; U Gerland
Journal:  Eur Phys J E Soft Matter       Date:  2006-03-07       Impact factor: 1.890

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.