Literature DB >> 11268311

Hypothesis testing for the genetic background of quantitative traits.

L A García-Cortés1, C Cabrillo, C Moreno, L Varona.   

Abstract

The testing of Bayesian point null hypotheses on variance component models have resulted in a tough assigmment for which no clear and generally accepted method exists. In this work we present what we believe is a succeeding approach to such a task. It is based on a simple reparameterization of the model in terms of the total variance and the proportion of the additive genetic variance with respect to it, as well as on the explicit inclusion on the prior probability of a discrete component at origin. The reparameterization was used to bypass an arbitrariness related to the impropriety of uninformative priors onto unbounded variables while the discrete component was necessary to overcome the zero probability assigned to sets of null measure by the usual continuous variable models. The method was tested against computer simulations with appealing results.

Entities:  

Mesh:

Year:  2001        PMID: 11268311      PMCID: PMC2705381          DOI: 10.1186/1297-9686-33-1-3

Source DB:  PubMed          Journal:  Genet Sel Evol        ISSN: 0999-193X            Impact factor:   4.297


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  8 in total

1.  Sex ratio variation in Iberian pigs.

Authors:  M A Toro; A Fernández; L A García-Cortés; J Rodrigáñez; L Silió
Journal:  Genetics       Date:  2006-04-02       Impact factor: 4.562

2.  Bayesian mapping of quantitative trait loci for multiple complex traits with the use of variance components.

Authors:  Jianfeng Liu; Yongjun Liu; Xiaogang Liu; Hong-Wen Deng
Journal:  Am J Hum Genet       Date:  2007-07-03       Impact factor: 11.025

3.  Genome scans for transmission ratio distortion regions in mice.

Authors:  Joaquim Casellas; Rodrigo J Gularte; Charles R Farber; Luis Varona; Margarete Mehrabian; Eric E Schadt; Aldon J Lusis; Alan D Attie; Brian S Yandell; Juan F Medrano
Journal:  Genetics       Date:  2012-02-23       Impact factor: 4.562

4.  Bayesian inference of mixed models in quantitative genetics of crop species.

Authors:  Fabyano Fonseca E Silva; José Marcelo Soriano Viana; Vinícius Ribeiro Faria; Marcos Deon Vilela de Resende
Journal:  Theor Appl Genet       Date:  2013-04-20       Impact factor: 5.699

5.  A flexible bayesian model for testing for transmission ratio distortion.

Authors:  Joaquim Casellas; Arianna Manunza; Anna Mercader; Raquel Quintanilla; Marcel Amills
Journal:  Genetics       Date:  2014-09-29       Impact factor: 4.562

6.  Derivation of a Bayes factor to distinguish between linked or pleiotropic quantitative trait loci.

Authors:  L Varona; L Gómez-Raya; W M Rauw; A Clop; C Ovilo; J L Noguera
Journal:  Genetics       Date:  2004-02       Impact factor: 4.562

7.  Efficient Markov chain Monte Carlo implementation of Bayesian analysis of additive and dominance genetic variances in noninbred pedigrees.

Authors:  Patrik Waldmann; Jon Hallander; Fabian Hoti; Mikko J Sillanpää
Journal:  Genetics       Date:  2008-06       Impact factor: 4.562

8.  Between-groups within-gene heterogeneity of residual variances in microarray gene expression data.

Authors:  Joaquim Casellas; Luis Varona
Journal:  BMC Genomics       Date:  2008-07-04       Impact factor: 3.969

  8 in total

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