Literature DB >> 11258593

The predictive power of haplotypes in clinical response.

R Judson1, J C Stephens, A Windemuth.   

Abstract

A variety of approaches have been proposed to find genetic markers that can be used in a clinical setting. Single nucleotide polymorphisms (SNPs) are the basis of the most commonly used approaches. Here we describe an approach using gene-based haplotypes, which are collections of SNPs located throughout the ftinctional regions of candidate genes, and organised as they occur separately on an individual's two chromosomes. The main point of this review is that the haplotype has greater power than any individual SNP to track an unobsenrved, but evolutionarily linked, variable site.

Mesh:

Year:  2000        PMID: 11258593     DOI: 10.1517/14622416.1.1.15

Source DB:  PubMed          Journal:  Pharmacogenomics        ISSN: 1462-2416            Impact factor:   2.533


  35 in total

1.  A dynamic model for functional mapping of biological rhythms.

Authors:  Guifang Fu; Jiangtao Luo; Arthur Berg; Zhong Wang; Jiahan Li; Kiranmoy Das; Runze Li; Rongling Wu
Journal:  J Biol Dyn       Date:  2011-01       Impact factor: 2.179

2.  Direct micro-haplotyping by multiple double PCR amplifications of specific alleles (MD-PASA).

Authors:  Yuval Eitan; Yechezkel Kashi
Journal:  Nucleic Acids Res       Date:  2002-06-15       Impact factor: 16.971

3.  Pharmacogenetics and pharmacogenomics: recent developments, their clinical relevance and some ethical, social, and legal implications.

Authors:  Paul W Norbert; Allen D Roses
Journal:  J Mol Med (Berl)       Date:  2003-03       Impact factor: 4.599

4.  Estimation of haplotype frequencies, linkage-disequilibrium measures, and combination of haplotype copies in each pool by use of pooled DNA data.

Authors:  Toshikazu Ito; Suenori Chiku; Eisuke Inoue; Makoto Tomita; Takayuki Morisaki; Hiroko Morisaki; Naoyuki Kamatani
Journal:  Am J Hum Genet       Date:  2003-01-17       Impact factor: 11.025

5.  Direct molecular haplotyping of long-range genomic DNA with M1-PCR.

Authors:  Chunming Ding; Charles R Cantor
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-11       Impact factor: 11.205

6.  Simultaneous estimation of haplotype frequencies and quantitative trait parameters: applications to the test of association between phenotype and diplotype configuration.

Authors:  Kyoko Shibata; Toshikazu Ito; Yutaka Kitamura; Naoko Iwasaki; Hiroshi Tanaka; Naoyuki Kamatani
Journal:  Genetics       Date:  2004-09       Impact factor: 4.562

7.  Association test algorithm between a qualitative phenotype and a haplotype or haplotype set using simultaneous estimation of haplotype frequencies, diplotype configurations and diplotype-based penetrances.

Authors:  Toshikazu Ito; Eisuke Inoue; Naoyuki Kamatani
Journal:  Genetics       Date:  2004-12       Impact factor: 4.562

Review 8.  Role of in silico tools in gene discovery.

Authors:  Bing Yu
Journal:  Mol Biotechnol       Date:  2008-12-20       Impact factor: 2.695

Review 9.  Quantitative assessment of the association between XPG Asp1104His polymorphism and bladder cancer risk.

Authors:  Chuan Liu; Qinghua Yin; Jianbing Hu; Jie Weng; Yajie Wang
Journal:  Tumour Biol       Date:  2013-09-06

10.  Risk haplotype analysis for bovine paratuberculosis.

Authors:  Pablo J Pinedo; Chenguang Wang; Yao Li; D Owen Rae; Rongling Wu
Journal:  Mamm Genome       Date:  2009-01-15       Impact factor: 2.957

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