Literature DB >> 11251222

Open systems: panoramic views of gene expression.

C D Green1, J F Simons, B E Taillon, D A Lewin.   

Abstract

Since their development in the early 1990s, differential gene expression (DGE) technologies have been applied to a multitude of biological challenges, both for the purpose of basic biological research and as a valuable tool for the discovery and development of pharmaceuticals. In this review we survey a class of DGE technologies collectively referred to as 'open' architecture systems. These technologies are distinct from the 'closed' DGE technologies (quantitative PCR, chip technologies), in that no pre-existing biological or sequence information is necessary and they are applicable to any species. Examples of open systems include GeneCalling, SAGE, TOGA, READS, and their progenitor DGE technologies, differential display and cDNA representational difference analysis. We review these technologies and summarize a specific application using GeneCalling for novel gene discovery. Additionally, the significance of data management and experimental design in this new age of expression analysis is discussed.

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Year:  2001        PMID: 11251222     DOI: 10.1016/s0022-1759(01)00306-4

Source DB:  PubMed          Journal:  J Immunol Methods        ISSN: 0022-1759            Impact factor:   2.303


  18 in total

1.  A critical evaluation of differential display as a tool to identify genes involved in legume nodulation: looking back and looking forward.

Authors:  S Lievens; S Goormachtig; M Holsters
Journal:  Nucleic Acids Res       Date:  2001-09-01       Impact factor: 16.971

2.  Customized molecular phenotyping by quantitative gene expression and pattern recognition analysis.

Authors:  Shreeram Akilesh; Daniel J Shaffer; Derry Roopenian
Journal:  Genome Res       Date:  2003-07       Impact factor: 9.043

3.  A sensitive transcriptome analysis method that can detect unknown transcripts.

Authors:  Ryutaro Fukumura; Hirokazu Takahashi; Toshiyuki Saito; Yoko Tsutsumi; Akira Fujimori; Shinji Sato; Kouichi Tatsumi; Ryoko Araki; Masumi Abe
Journal:  Nucleic Acids Res       Date:  2003-08-15       Impact factor: 16.971

Review 4.  Methods for transcriptional profiling in plants. Be fruitful and replicate.

Authors:  Blake C Meyers; David W Galbraith; Timothy Nelson; Vikas Agrawal
Journal:  Plant Physiol       Date:  2004-06-01       Impact factor: 8.340

5.  Isolation of candidate genes for apomixis in Poa pratensis L.

Authors:  Emidio Albertini; Gianpiero Marconi; Gianni Barcaccia; Lorenzo Raggi; Mario Falcinelli
Journal:  Plant Mol Biol       Date:  2005-04-07       Impact factor: 4.076

6.  Metagenomics in animal gastrointestinal ecosystem: a microbiological and biotechnological perspective.

Authors:  B Singh; T K Bhat; N P Kurade; O P Sharma
Journal:  Indian J Microbiol       Date:  2008-06-17       Impact factor: 2.461

7.  Transcriptomic analysis in the leech Theromyzon tessulatum: involvement of cystatin B in innate immunity.

Authors:  Christophe Lefebvre; Claude Cocquerelle; Franck Vandenbulcke; David Hot; Ludovic Huot; Yves Lemoine; Michel Salzet
Journal:  Biochem J       Date:  2004-06-15       Impact factor: 3.857

8.  Transcriptome response to pollutants and insecticides in the dengue vector Aedes aegypti using next-generation sequencing technology.

Authors:  Jean-Philippe David; Eric Coissac; Christelle Melodelima; Rodolphe Poupardin; Muhammad Asam Riaz; Alexia Chandor-Proust; Stéphane Reynaud
Journal:  BMC Genomics       Date:  2010-03-31       Impact factor: 3.969

9.  Modified serial analysis of gene expression method for construction of gene expression profiles of microbial eukaryotic species.

Authors:  Kathryn J Coyne; JoAnn M Burkholder; Robert A Feldman; David A Hutchins; S Craig Cary
Journal:  Appl Environ Microbiol       Date:  2004-09       Impact factor: 4.792

10.  Distinct transcriptional profiles of adrenocortical tumors uncovered by DNA microarray analysis.

Authors:  Thomas J Giordano; Dafydd G Thomas; Rork Kuick; Michelle Lizyness; David E Misek; Angela L Smith; Donita Sanders; Rima T Aljundi; Paul G Gauger; Norman W Thompson; Jeremy M G Taylor; Samir M Hanash
Journal:  Am J Pathol       Date:  2003-02       Impact factor: 4.307

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