Literature DB >> 11248014

Using three-dimensional microfluidic networks for solving computationally hard problems.

D T Chiu1, E Pezzoli, H Wu, A D Stroock, G M Whitesides.   

Abstract

This paper describes the design of a parallel algorithm that uses moving fluids in a three-dimensional microfluidic system to solve a nondeterministically polynomial complete problem (the maximal clique problem) in polynomial time. This algorithm relies on (i) parallel fabrication of the microfluidic system, (ii) parallel searching of all potential solutions by using fluid flow, and (iii) parallel optical readout of all solutions. This algorithm was implemented to solve the maximal clique problem for a simple graph with six vertices. The successful implementation of this algorithm to compute solutions for small-size graphs with fluids in microchannels is not useful, per se, but does suggest broader application for microfluidics in computation and control.

Mesh:

Year:  2001        PMID: 11248014      PMCID: PMC30589          DOI: 10.1073/pnas.061014198

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  12 in total

1.  Patterned deposition of cells and proteins onto surfaces by using three-dimensional microfluidic systems.

Authors:  D T Chiu; N L Jeon; S Huang; R S Kane; C J Wargo; I S Choi; D E Ingber; G M Whitesides
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-14       Impact factor: 11.205

2.  Logical computation using algorithmic self-assembly of DNA triple-crossover molecules.

Authors:  C Mao; T H LaBean; J H Relf; N C Seeman
Journal:  Nature       Date:  2000-09-28       Impact factor: 49.962

3.  Fabrication of topologically complex three-dimensional microfluidic systems in PDMS by rapid prototyping.

Authors:  J R Anderson; D T Chiu; R J Jackman; O Cherniavskaya; J C McDonald; H Wu; S H Whitesides; G M Whitesides
Journal:  Anal Chem       Date:  2000-07-15       Impact factor: 6.986

4.  An integrated nanoliter DNA analysis device.

Authors:  M A Burns; B N Johnson; S N Brahmasandra; K Handique; J R Webster; M Krishnan; T S Sammarco; P M Man; D Jones; D Heldsinger; C H Mastrangelo; D T Burke
Journal:  Science       Date:  1998-10-16       Impact factor: 47.728

5.  Making DNA add.

Authors:  F Guarnieri; M Fliss; C Bancroft
Journal:  Science       Date:  1996-07-12       Impact factor: 47.728

6.  DNA solution of the maximal clique problem.

Authors:  Q Ouyang; P D Kaplan; S Liu; A Libchaber
Journal:  Science       Date:  1997-10-17       Impact factor: 47.728

7.  Bulk Spin-Resonance Quantum Computation

Authors: 
Journal:  Science       Date:  1997-01-17       Impact factor: 47.728

8.  Rapid Prototyping of Microfluidic Systems in Poly(dimethylsiloxane).

Authors:  D C Duffy; J C McDonald; O J Schueller; G M Whitesides
Journal:  Anal Chem       Date:  1998-12-01       Impact factor: 6.986

9.  DNA solution of hard computational problems.

Authors:  R J Lipton
Journal:  Science       Date:  1995-04-28       Impact factor: 47.728

10.  Molecular computation of solutions to combinatorial problems.

Authors:  L M Adleman
Journal:  Science       Date:  1994-11-11       Impact factor: 47.728

View more
  9 in total

1.  Formation of geometrically complex lipid nanotube-vesicle networks of higher-order topologies.

Authors:  Mattias Karlsson; Kristin Sott; Maximillian Davidson; Ann-Sofie Cans; Pontus Linderholm; Daniel Chiu; Owe Orwar
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-16       Impact factor: 11.205

2.  Behavior of fluids in nanoscopic space.

Authors:  Sandip Niyogi; Robert C Haddon
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-19       Impact factor: 11.205

3.  Three-dimensional fit-to-flow microfluidic assembly.

Authors:  Arnold Chen; Tingrui Pan
Journal:  Biomicrofluidics       Date:  2011-12-14       Impact factor: 2.800

4.  Parallel computation with molecular-motor-propelled agents in nanofabricated networks.

Authors:  Dan V Nicolau; Mercy Lard; Till Korten; Falco C M J M van Delft; Malin Persson; Elina Bengtsson; Alf Månsson; Stefan Diez; Heiner Linke; Dan V Nicolau
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-22       Impact factor: 11.205

5.  Fabrication of a hybrid microfluidic system incorporating both lithographically patterned microchannels and a 3D fiber-formed microfluidic network.

Authors:  Leon M Bellan; Tatiana Kniazeva; Ernest S Kim; Alla A Epshteyn; Donald M Cropek; Robert Langer; Jeffrey T Borenstein
Journal:  Adv Healthc Mater       Date:  2012-03       Impact factor: 9.933

Review 6.  Microfluidic devices for measuring gene network dynamics in single cells.

Authors:  Matthew R Bennett; Jeff Hasty
Journal:  Nat Rev Genet       Date:  2009-08-11       Impact factor: 53.242

Review 7.  Something has to give: scaling combinatorial computing by biological agents exploring physical networks encoding NP-complete problems.

Authors:  Falco C M J M van Delft; Giulia Ipolitti; Dan V Nicolau; Ayyappasamy Sudalaiyadum Perumal; Ondřej Kašpar; Sara Kheireddine; Sebastian Wachsmann-Hogiu; Dan V Nicolau
Journal:  Interface Focus       Date:  2018-10-19       Impact factor: 3.906

8.  Patterns of bacterial motility in microfluidics-confining environments.

Authors:  Viola Tokárová; Ayyappasamy Sudalaiyadum Perumal; Monalisha Nayak; Henry Shum; Ondřej Kašpar; Kavya Rajendran; Mahmood Mohammadi; Charles Tremblay; Eamonn A Gaffney; Sylvain Martel; Dan V Nicolau; Dan V Nicolau
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-27       Impact factor: 11.205

Review 9.  Single-cell RNA sequencing technologies and bioinformatics pipelines.

Authors:  Byungjin Hwang; Ji Hyun Lee; Duhee Bang
Journal:  Exp Mol Med       Date:  2018-08-07       Impact factor: 8.718

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.