Literature DB >> 11241218

Solvent-induced beta-hairpin to helix conformational transition in a designed peptide.

S K Awasthi1, S C Shankaramma, S Raghothama, P Balaram.   

Abstract

An octapeptide containing a central -Aib-Gly- segment capable of adopting beta-turn conformations compatible with both hairpin (beta(II') or beta(I')) and helical (beta(I)) structures has been designed. The effect of solvent on the conformation of the peptide Boc-Leu-Val-Val-Aib-Gly-Leu-Val-Val-OMe (VIII; Boc: t-butyloxycarbonyl; OMe: methyl ester) has been investigated by NMR and CD spectroscopy. Peptide VIII adopts a well-defined beta-hairpin conformation in solvents capable of hydrogen bonding like (CD(3))(2)SO and CD(3)OH. In solvents that have a lower tendency to interact with backbone peptide groups, like CDCl(3) and CD(3)CN, helical conformations predominate. Nuclear Overhauser effects between the backbone protons and solvent shielding of NH groups involved in cross-strand hydrogen bonding, backbone chemical shifts, and vicinal coupling constants provide further support for the conformational assignments in different solvents. Truncated peptides Boc-Val-Val-Aib-Gly-Leu-Val-Val-OMe (VII), Boc-Val-Val-Aib-Gly-Leu-Val-OMe (VI), and Boc-Val-Aib-Gly-Leu-OMe (IV) were studied in CDCl(3) and (CD(3))(2)SO by 500 MHz (1)H-NMR spectroscopy. Peptides IV and VI show no evidence for hairpin conformation in both the solvents. The three truncated peptides show a well-defined helical conformation in CDCl(3). In (CD(3))(2)SO, peptide VII adopts a beta-hairpin conformation. The results establish that peptides may be designed, which are poised to undergo a dramatic conformational transition.

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Year:  2001        PMID: 11241218     DOI: 10.1002/1097-0282(20010415)58:5<465::AID-BIP1022>3.0.CO;2-T

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  6 in total

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Journal:  Protein Sci       Date:  2004-11       Impact factor: 6.725

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4.  Diversity of Secondary Structure in Catalytic Peptides with β-Turn-Biased Sequences.

Authors:  Anthony J Metrano; Nadia C Abascal; Brandon Q Mercado; Eric K Paulson; Anna E Hurtley; Scott J Miller
Journal:  J Am Chem Soc       Date:  2016-12-28       Impact factor: 15.419

5.  Reversible fold-switching controls the functional cycle of the antitermination factor RfaH.

Authors:  Philipp Konrad Zuber; Kristian Schweimer; Paul Rösch; Irina Artsimovitch; Stefan H Knauer
Journal:  Nat Commun       Date:  2019-02-11       Impact factor: 14.919

6.  Disorder-to-Order Markers of a Cyclic Hexapeptide Inspired from the Binding Site of Fertilin β Involved in Fertilization Process.

Authors:  Belén Henández; Pauline Legrand; Sophie Dufay; Rabah Gahoual; Santiago Sanchez-Cortes; Sergei G Kruglik; Jean-Roch Fabreguettes; Jean-Philippe Wolf; Pascal Houzé; Mahmoud Ghomi
Journal:  ACS Omega       Date:  2019-10-22
  6 in total

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