Literature DB >> 11238077

Virtual PCR.

M Lexa1, J Horak, B Brzobohaty.   

Abstract

UNLABELLED: We present an algorithm that uses public sequence data to predict PCR products. The algorithm is implemented as a CGI script. Output is compared to real-world PCR. AVAILABILITY: Perl code and instructions for installation are freely available over the internet at http://www.sci.muni.cz/LMFR/vpcr.html.

Mesh：

Substances：

Year:  2001        PMID： 11238077     DOI： 10.1093/bioinformatics/17.2.192

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  15 in total

1.  Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression.

Authors:  Mathieu Blanchette; Alain R Bataille; Xiaoyu Chen; Christian Poitras; Josée Laganière; Céline Lefèbvre; Geneviève Deblois; Vincent Giguère; Vincent Ferretti; Dominique Bergeron; Benoit Coulombe; François Robert
Journal:  Genome Res       Date:  2006-04-10       Impact factor: 9.043

2.  From the Cover: Location analysis of estrogen receptor alpha target promoters reveals that FOXA1 defines a domain of the estrogen response.

Authors:  Josée Laganière; Geneviève Deblois; Céline Lefebvre; Alain R Bataille; François Robert; Vincent Giguère
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-08       Impact factor: 11.205

3.  Nuclear receptor ERR alpha and coactivator PGC-1 beta are effectors of IFN-gamma-induced host defense.

Authors:  Junichiro Sonoda; Josée Laganière; Isaac R Mehl; Grant D Barish; Ling-Wa Chong; Xiangli Li; Immo E Scheffler; Dennis C Mock; Alain R Bataille; Francois Robert; Chih-Hao Lee; Vincent Giguère; Ronald M Evans
Journal:  Genes Dev       Date:  2007-08-01       Impact factor: 11.361

4.  T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data.

Authors:  Anna-Sophie Fiston-Lavier; Matthew Carrigan; Dmitri A Petrov; Josefa González
Journal:  Nucleic Acids Res       Date:  2010-12-21       Impact factor: 16.971

5.  In Silico RAPD Priming Sites in Expressed Sequences and iSCAR Markers for Oil Palm.

Authors:  Balakrishnan Vasanthakumari Premkrishnan; Vadivel Arunachalam
Journal:  Comp Funct Genomics       Date:  2012-03-13

6.  MFEprimer-2.0: a fast thermodynamics-based program for checking PCR primer specificity.

Authors:  Wubin Qu; Yang Zhou; Yanchun Zhang; Yiming Lu; Xiaolei Wang; Dongsheng Zhao; Yi Yang; Chenggang Zhang
Journal:  Nucleic Acids Res       Date:  2012-06-11       Impact factor: 16.971

7.  MiCA: a web-based tool for the analysis of microbial communities based on terminal-restriction fragment length polymorphisms of 16S and 18S rRNA genes.

Authors:  Conrad Shyu; Terry Soule; Stephen J Bent; James A Foster; Larry J Forney
Journal:  Microb Ecol       Date:  2007-04-04       Impact factor: 4.192

8.  Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome.

Authors:  Mikhail Lipatov; Kapa Lenkov; Dmitri A Petrov; Casey M Bergman
Journal:  BMC Biol       Date:  2005-11-12       Impact factor: 7.431

9.  Genomorama: genome visualization and analysis.

Authors:  Jason D Gans; Murray Wolinsky
Journal:  BMC Bioinformatics       Date:  2007-06-14       Impact factor: 3.169

10.  High rate of recent transposable element-induced adaptation in Drosophila melanogaster.

Authors:  Josefa González; Kapa Lenkov; Mikhail Lipatov; J Michael Macpherson; Dmitri A Petrov
Journal:  PLoS Biol       Date:  2008-10-21       Impact factor: 8.029
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.