Literature DB >> 11238076

Distribution of genes for lysine biosynthesis through the aminoadipate pathway among prokaryotic genomes.

H Nishida1.   

Abstract

Deinococcus radioduranshas homologous genes to the genes which from the Thermus: thermophilus gene cluster for lysine biosynthesis. Interestingly, those genes are clustered in Thermus, nevertheless they are scattered in Deinococcus. A similar gene cluster has only been found in Pyrococcus However, the phylogenetic analyses indicated that the deduced gene products from Deinococcus were the most closely related to the proteins encoded in the Thermus gene cluster for lysine biosynthesis. Therefore, those genes had not been transferred horizontally between Pyrococcus and Thermus. It is strongly suggested that a common ancestor of Deinococcus and Thermus possessed the genes for lysine biosynthesis through the aminoadipate pathway. These had been clustered through the evolution of Thermus or had been scattered from the gene cluster through the evolution of Deinococcus. In addition, I showed that LysW and its homologues were specialized proteins for the prokaryotic lysine biosynthesis through the aminoadipate pathway.

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Year:  2001        PMID: 11238076     DOI: 10.1093/bioinformatics/17.2.189

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  7 in total

1.  The primordial metabolism: an ancestral interconnection between leucine, arginine, and lysine biosynthesis.

Authors:  Marco Fondi; Matteo Brilli; Giovanni Emiliani; Donatella Paffetti; Renato Fani
Journal:  BMC Evol Biol       Date:  2007-08-16       Impact factor: 3.260

2.  Comparative analyses of homocitrate synthase genes of ascomycetous yeasts.

Authors:  Hiromi Nishida
Journal:  Int J Evol Biol       Date:  2012-03-18

3.  Evolution of lysine biosynthesis in the phylum deinococcus-thermus.

Authors:  Hiromi Nishida; Makoto Nishiyama
Journal:  Int J Evol Biol       Date:  2012-05-08

4.  Aminoadipate reductase gene: a new fungal-specific gene for comparative evolutionary analyses.

Authors:  Kwang-Deuk An; Hiromi Nishida; Yoshiharu Miura; Akira Yokota
Journal:  BMC Evol Biol       Date:  2002-04-03       Impact factor: 3.260

5.  Endosymbiosis in trypanosomatids: the genomic cooperation between bacterium and host in the synthesis of essential amino acids is heavily influenced by multiple horizontal gene transfers.

Authors:  João M P Alves; Cecilia C Klein; Flávia Maia da Silva; André G Costa-Martins; Myrna G Serrano; Gregory A Buck; Ana Tereza R Vasconcelos; Marie-France Sagot; Marta M G Teixeira; Maria Cristina M Motta; Erney P Camargo
Journal:  BMC Evol Biol       Date:  2013-09-09       Impact factor: 3.260

6.  Comparative genomics and phylogenomic analyses of lysine riboswitch distributions in bacteria.

Authors:  Sumit Mukherjee; Danny Barash; Supratim Sengupta
Journal:  PLoS One       Date:  2017-09-05       Impact factor: 3.240

7.  The fungal α-aminoadipate pathway for lysine biosynthesis requires two enzymes of the aconitase family for the isomerization of homocitrate to homoisocitrate.

Authors:  Felicitas Fazius; Ekaterina Shelest; Peter Gebhardt; Matthias Brock
Journal:  Mol Microbiol       Date:  2012-11-06       Impact factor: 3.501

  7 in total

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