Literature DB >> 11233978

snoRNA nuclear import and potential for cotranscriptional function in pre-rRNA processing.

B A Peculis1.   

Abstract

Several snoRNAs are essential for the sequence of cleavage events required to produce the mature forms of 18S, 5.8S, and 28S rRNA from the large precursor molecule. In the absence of U22, mature 18S rRNA fails to accumulate; U8 snoRNA is essential for accumulation of both 5.8S and 28S rRNA. The mechanisms by which snoRNAs facilitate these cleavage events is not known and might include direct cleavage or assisting the rate or efficiency of ribosome assembly. To learn more about the mechanisms of snoRNA-mediated pre-rRNA processing, an examination of the kinetics of pre-rRNA processing in Xenopus oocytes was undertaken. Correct pre-rRNA processing can be restored in snoRNA-depleted oocytes following cytoplasmic injection of the corresponding in vitro-synthesized snoRNA. Analysis of the kinetics of pre-rRNA processing in these snoRNA-rescue experiments demonstrated that the rate of accumulation of mature rRNAs was slower than that seen in untreated oocytes. The snoRNAs were imported into the nucleus at a rate and overall efficiency less than that of U1 snRNA, used as a control for import. However, sufficient levels of snoRNA were present in the nucleus to yield a functional phenotype (rescue of rRNA processing) several hours before the snoRNAs were directly detectable in the nucleus via autoradiography. This indicated that very low amounts of the snoRNA in the nucleus were sufficient for rescue. Finally, transcriptional inhibitors were used to separate transcription and processing. Failure to rescue snoRNA-mediated processing of pre-accumulated precursors is consistent with a scenario in which U8 and U22 must be present during transcription of pre-rRNA.

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Year:  2001        PMID: 11233978      PMCID: PMC1370079          DOI: 10.1017/s1355838201001625

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  46 in total

1.  Nuclear retention elements of U3 small nucleolar RNA.

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Journal:  Mol Cell Biol       Date:  1999-12       Impact factor: 4.272

2.  The exosome subunit Rrp43p is required for the efficient maturation of 5.8S, 18S and 25S rRNA.

Authors:  N I Zanchin; D S Goldfarb
Journal:  Nucleic Acids Res       Date:  1999-03-01       Impact factor: 16.971

Review 3.  Nuclear transport of RNAs in microinjected Xenopus oocytes.

Authors:  M P Terns; D S Goldfarb
Journal:  Methods Cell Biol       Date:  1998       Impact factor: 1.441

4.  Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs.

Authors:  P Ganot; M L Bortolin; T Kiss
Journal:  Cell       Date:  1997-05-30       Impact factor: 41.582

5.  RNA processing: pocket guides to ribosomal RNA.

Authors:  B Peculis
Journal:  Curr Biol       Date:  1997-08-01       Impact factor: 10.834

6.  Changes in the rate of histone synthesis during oocyte maturation and very early development of Xenopus laevis.

Authors:  E D Adamson; H R Woodland
Journal:  Dev Biol       Date:  1977-05       Impact factor: 3.582

Review 7.  Ribosome synthesis in Saccharomyces cerevisiae.

Authors:  J Venema; D Tollervey
Journal:  Annu Rev Genet       Date:  1999       Impact factor: 16.830

8.  Organization of small nucleolar ribonucleoproteins (snoRNPs) by fluorescence in situ hybridization and immunocytochemistry.

Authors:  A G Matera; K T Tycowski; J A Steitz; D C Ward
Journal:  Mol Biol Cell       Date:  1994-12       Impact factor: 4.138

9.  A nuclear extract of Xenopus laevis oocytes that accurately transcribes 5S RNA genes.

Authors:  E H Birkenmeier; D D Brown; E Jordan
Journal:  Cell       Date:  1978-11       Impact factor: 41.582

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Authors:  D Weisenberger; U Scheer
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  12 in total

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Journal:  Mol Cell Biol       Date:  2004-08       Impact factor: 4.272

3.  Pre-ribosomal RNA reorganizes DNA damage repair factors in nucleus during meiotic prophase and DNA damage response.

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5.  The profile of snoRNA-derived microRNAs that regulate expression of variant surface proteins in Giardia lamblia.

Authors:  Wei Li; Ashesh A Saraiya; Ching C Wang
Journal:  Cell Microbiol       Date:  2012-05-23       Impact factor: 3.715

6.  Involvement of nuclear import and export factors in U8 box C/D snoRNP biogenesis.

Authors:  Nicholas J Watkins; Ira Lemm; Reinhard Lührmann
Journal:  Mol Cell Biol       Date:  2007-08-20       Impact factor: 4.272

7.  Gene regulation in Giardia lambia involves a putative microRNA derived from a small nucleolar RNA.

Authors:  Wei Li; Ashesh A Saraiya; Ching C Wang
Journal:  PLoS Negl Trop Dis       Date:  2011-10-18

8.  Computer simulation of chaperone effects of Archaeal C/D box sRNA binding on rRNA folding.

Authors:  Ruud J W Schoemaker; Alexander P Gultyaev
Journal:  Nucleic Acids Res       Date:  2006-04-13       Impact factor: 16.971

9.  An evolutionary intra-molecular shift in the preferred U3 snoRNA binding site on pre-ribosomal RNA.

Authors:  Anton V Borovjagin; Susan A Gerbi
Journal:  Nucleic Acids Res       Date:  2005-09-06       Impact factor: 16.971

10.  Fibrillarin is essential for early development and required for accumulation of an intron-encoded small nucleolar RNA in the mouse.

Authors:  Kathryn Newton; Elisabeth Petfalski; David Tollervey; Javier F Cáceres
Journal:  Mol Cell Biol       Date:  2003-12       Impact factor: 4.272

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