Literature DB >> 11226222

The nitrite reductase from Pseudomonas aeruginosa: essential role of two active-site histidines in the catalytic and structural properties.

F Cutruzzola1, K Brown, E K Wilson, A Bellelli, M Arese, M Tegoni, C Cambillau, M Brunori.   

Abstract

Cd(1) nitrite reductase catalyzes the conversion of nitrite to NO in denitrifying bacteria. Reduction of the substrate occurs at the d(1)-heme site, which faces on the distal side some residues thought to be essential for substrate binding and catalysis. We report the results obtained by mutating to Ala the two invariant active site histidines, His-327 and His-369, of the enzyme from Pseudomonas aeruginosa. Both mutants have lost nitrite reductase activity but maintain the ability to reduce O(2) to water. Nitrite reductase activity is impaired because of the accumulation of a catalytically inactive form, possibly because the productive displacement of NO from the ferric d(1)-heme iron is impaired. Moreover, the two distal His play different roles in catalysis; His-369 is absolutely essential for the stability of the Michaelis complex. The structures of both mutants show (i) the new side chain in the active site, (ii) a loss of density of Tyr-10, which slipped away with the N-terminal arm, and (iii) a large topological change in the whole c-heme domain, which is displaced 20 A from the position occupied in the wild-type enzyme. We conclude that the two invariant His play a crucial role in the activity and the structural organization of cd(1) nitrite reductase from P. aeruginosa.

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Year:  2001        PMID: 11226222      PMCID: PMC30121          DOI: 10.1073/pnas.041365298

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

1.  Dissimilatory Nitrite and Nitric Oxide Reductases.

Authors:  Bruce A. Averill
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

2.  Mutagenesis of nitrite reductase from Pseudomonas aeruginosa: tyrosine-10 in the c heme domain is not involved in catalysis.

Authors:  F Cutruzzolà; M Arese; S Grasso; A Bellelli; M Brunori
Journal:  FEBS Lett       Date:  1997-07-28       Impact factor: 4.124

3.  The electron-transfer reaction between azurin and the cytochrome c oxidase from Pseudomonas aeruginosa.

Authors:  S R Parr; D Barber; C Greenwood; M Brunori
Journal:  Biochem J       Date:  1977-11-01       Impact factor: 3.857

4.  X-ray crystallographic study of cyanide binding provides insights into the structure-function relationship for cytochrome cd1 nitrite reductase from Paracoccus pantotrophus.

Authors:  A Jafferji; J W Allen; S J Ferguson; V Fulop
Journal:  J Biol Chem       Date:  2000-08-18       Impact factor: 5.157

5.  Inhibitor binding changes domain mobility in the iron-sulfur protein of the mitochondrial bc1 complex from bovine heart.

Authors:  H Kim; D Xia; C A Yu; J Z Xia; A M Kachurin; L Zhang; L Yu; J Deisenhofer
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-07       Impact factor: 11.205

6.  A re-evaluation of some basic structural and functional properties of Pseudomonas cytochrome oxidase.

Authors:  M C Silvestrini; A Colosimo; M Brunori; T A Walsh; D Barber; C Greenwood
Journal:  Biochem J       Date:  1979-12-01       Impact factor: 3.857

Review 7.  Cell biology and molecular basis of denitrification.

Authors:  W G Zumft
Journal:  Microbiol Mol Biol Rev       Date:  1997-12       Impact factor: 11.056

8.  N-terminal arm exchange is observed in the 2.15 A crystal structure of oxidized nitrite reductase from Pseudomonas aeruginosa.

Authors:  D Nurizzo; M C Silvestrini; M Mathieu; F Cutruzzolà; D Bourgeois; V Fülöp; J Hajdu; M Brunori; M Tegoni; C Cambillau
Journal:  Structure       Date:  1997-09-15       Impact factor: 5.006

9.  A re-evaluation of the taxonomy of Paracoccus denitrificans and a proposal for the combination Paracoccus pantotrophus comb. nov.

Authors:  F A Rainey; D P Kelly; E Stackebrandt; J Burghardt; A Hiraishi; Y Katayama; A P Wood
Journal:  Int J Syst Bacteriol       Date:  1999-04

10.  Conformational changes occurring upon reduction and NO binding in nitrite reductase from Pseudomonas aeruginosa.

Authors:  D Nurizzo; F Cutruzzolà; M Arese; D Bourgeois; M Brunori; C Cambillau; M Tegoni
Journal:  Biochemistry       Date:  1998-10-06       Impact factor: 3.162

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  8 in total

1.  Higher diversity and abundance of denitrifying microorganisms in environments than considered previously.

Authors:  Wei Wei; Kazuo Isobe; Tomoyasu Nishizawa; Lin Zhu; Yutaka Shiratori; Nobuhito Ohte; Keisuke Koba; Shigeto Otsuka; Keishi Senoo
Journal:  ISME J       Date:  2015-03-10       Impact factor: 10.302

2.  Intramolecular electron transfer in Pseudomonas aeruginosa cd(1) nitrite reductase: thermodynamics and kinetics.

Authors:  Ole Farver; Maurizio Brunori; Francesca Cutruzzolà; Serena Rinaldo; Scot Wherland; Israel Pecht
Journal:  Biophys J       Date:  2009-04-08       Impact factor: 4.033

3.  A novel, kinetically stable, catalytically active, all-ferric, nitrite-bound complex of Paracoccus pantotrophus cytochrome cd1.

Authors:  James W A Allen; Christopher W Higham; Richard S Zajicek; Nicholas J Watmough; Stuart J Ferguson
Journal:  Biochem J       Date:  2002-09-15       Impact factor: 3.857

4.  Rational design of a nitrite reductase based on myoglobin: a molecular modeling and dynamics simulation study.

Authors:  Ying-Wu Lin; Chang-Ming Nie; Li-Fu Liao
Journal:  J Mol Model       Date:  2012-05-16       Impact factor: 1.810

Review 5.  Nitrite and nitrate chemical biology and signalling.

Authors:  Anthony W DeMartino; Daniel B Kim-Shapiro; Rakesh P Patel; Mark T Gladwin
Journal:  Br J Pharmacol       Date:  2018-10-03       Impact factor: 8.739

6.  The functional role of the structure of the dioxo-isobacteriochlorin in the catalytic site of cytochrome cd1 for the reduction of nitrite.

Authors:  Hiroshi Fujii; Daisuke Yamaki; Takashi Ogura; Masahiko Hada
Journal:  Chem Sci       Date:  2016-01-20       Impact factor: 9.825

Review 7.  Protein complex formation during denitrification by Pseudomonas aeruginosa.

Authors:  José Manuel Borrero-de Acuña; Kenneth N Timmis; Martina Jahn; Dieter Jahn
Journal:  Microb Biotechnol       Date:  2017-08-31       Impact factor: 5.813

8.  Structure of heme d1-free cd1 nitrite reductase NirS.

Authors:  Thomas Klünemann; Wulf Blankenfeldt
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2020-05-29       Impact factor: 1.056

  8 in total

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