Literature DB >> 11192126

Polymeric matrices for DNA sequencing by capillary electrophoresis.

M N Albarghouthi1, A E Barron.   

Abstract

We review the wide range of polymeric materials that have been employed for DNA sequencing separations by capillary electrophoresis. Intensive research in the area has converged in showing that highly entangled solutions of hydrophilic, high molar mass polymers are required to achieve high DNA separation efficiency and long read length, system attributes that are particularly important for genomic sequencing. The extent of DNA-polymer interactions, as well as the robustness of the entangled polymer network, greatly influence the performance of a given polymer matrix for DNA separation. Further fundamental research in the field of polymer physics and chemistry is needed to elucidate the specific mechanisms by which DNA is separated in dynamic, uncross-linked polymer networks.

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Year:  2000        PMID: 11192126     DOI: 10.1002/1522-2683(200012)21:18<4096::AID-ELPS4096>3.0.CO;2-W

Source DB:  PubMed          Journal:  Electrophoresis        ISSN: 0173-0835            Impact factor:   3.535


  8 in total

1.  Identification of PCR products using PNA amphiphiles in micellar electrokinetic chromatography.

Authors:  Shane T Grosser; Jeffrey M Savard; James W Schneider
Journal:  Anal Chem       Date:  2007-11-20       Impact factor: 6.986

Review 2.  Beyond gel electrophoresis: microfluidic separations, fluorescence burst analysis, and DNA stretching.

Authors:  Kevin D Dorfman; Scott B King; Daniel W Olson; Joel D P Thomas; Douglas R Tree
Journal:  Chem Rev       Date:  2012-11-12       Impact factor: 60.622

3.  Non-ionic, thermo-responsive DEA/DMA nanogels: synthesis, characterization, and use for DNA separations by microchip electrophoresis.

Authors:  Xihua Lu; Mingyun Sun; Annelise E Barron
Journal:  J Colloid Interface Sci       Date:  2011-02-01       Impact factor: 8.128

4.  Reduced matrix viscosity in DNA sequencing by CE and microchip electrophoresis using a novel thermo-responsive copolymer.

Authors:  Fen Wan; Weidong He; Jun Zhang; Benjamin Chu
Journal:  Electrophoresis       Date:  2009-07       Impact factor: 3.535

5.  DNA migration mechanism analyses for applications in capillary and microchip electrophoresis.

Authors:  Ryan E Forster; Daniel G Hert; Thomas N Chiesl; Christopher P Fredlake; Annelise E Barron
Journal:  Electrophoresis       Date:  2009-06       Impact factor: 3.535

6.  Ultrafast DNA sequencing on a microchip by a hybrid separation mechanism that gives 600 bases in 6.5 minutes.

Authors:  Christopher P Fredlake; Daniel G Hert; Cheuk-Wai Kan; Thomas N Chiesl; Brian E Root; Ryan E Forster; Annelise E Barron
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-09       Impact factor: 11.205

Review 7.  Capillary electrophoresis applied to DNA: determining and harnessing sequence and structure to advance bioanalyses (2009-2014).

Authors:  Brandon C Durney; Cassandra L Crihfield; Lisa A Holland
Journal:  Anal Bioanal Chem       Date:  2015-05-03       Impact factor: 4.142

8.  µLAS: Sizing of expanded trinucleotide repeats with femtomolar sensitivity in less than 5 minutes.

Authors:  Rémi Malbec; Bayan Chami; Lorène Aeschbach; Gustavo A Ruiz Buendía; Marius Socol; Pierre Joseph; Thierry Leïchlé; Evgeniya Trofimenko; Aurélien Bancaud; Vincent Dion
Journal:  Sci Rep       Date:  2019-01-10       Impact factor: 4.379

  8 in total

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