Literature DB >> 11181579

The genome-wide distribution of background linkage disequilibrium in a population isolate.

S K Service1, R A Ophoff, N B Freimer.   

Abstract

Recent interest in using association studies to investigate complex traits has focused attention on understanding linkage disequilibrium (LD) in the human genome. We examined the genome-wide distribution and magnitude of such background LD (BLD) using 1036 densely spaced microsatellites, in a sample from the demographically well characterized population of the Central Valley of Costa Rica. High levels of BLD were found between linked markers several centiMorgans apart, and although BLD was significantly related to genetic distance between markers it was not spread uniformly throughout the genome. Understanding the forces governing the distribution of BLD in the genome will require similar investigations using a standard set of markers in other populations.

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Year:  2001        PMID: 11181579     DOI: 10.1093/hmg/10.5.545

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  23 in total

1.  Genomewide linkage disequilibrium mapping of severe bipolar disorder in a population isolate.

Authors:  Roel A Ophoff; Michael A Escamilla; Susan K Service; Mitzi Spesny; Dar B Meshi; Wingman Poon; Julio Molina; Eduardo Fournier; Alvaro Gallegos; Carol Mathews; Thomas Neylan; Steven L Batki; Erin Roche; Margarita Ramirez; Sandra Silva; Melissa C De Mille; Penny Dong; Pedro E Leon; Victor I Reus; Lodewijk A Sandkuijl; Nelson B Freimer
Journal:  Am J Hum Genet       Date:  2002-07-15       Impact factor: 11.025

2.  Common 5' beta-globin RFLP haplotypes harbour a surprising level of ancestral sequence mosaicism.

Authors:  Matthew T Webster; John B Clegg; Rosalind M Harding
Journal:  Hum Genet       Date:  2003-05-08       Impact factor: 4.132

3.  Cost-effective designs for linkage disequilibrium mapping of complex traits.

Authors:  Susan K Service; Lodewijk A Sandkuijl; Nelson B Freimer
Journal:  Am J Hum Genet       Date:  2003-04-14       Impact factor: 11.025

4.  The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern.

Authors:  Francisco M De La Vega; Hadar Isaac; Andrew Collins; Charles R Scafe; Bjarni V Halldórsson; Xiaoping Su; Ross A Lippert; Yu Wang; Marion Laig-Webster; Ryan T Koehler; Janet S Ziegle; Lewis T Wogan; Junko F Stevens; Kyle M Leinen; Sheri J Olson; Karl J Guegler; Xiaoqing You; Lily H Xu; Heinz G Hemken; Francis Kalush; Mitsuo Itakura; Yi Zheng; Guy de Thé; Stephen J O'Brien; Andrew G Clark; Sorin Istrail; Michael W Hunkapiller; Eugene G Spier; Dennis A Gilbert
Journal:  Genome Res       Date:  2005-03-21       Impact factor: 9.043

5.  Sequence variation in IGF1R is associated with differences in insulin levels in nondiabetic Old Order Amish.

Authors:  Adam C Naj; Wen-Hong L Kao; Jeffrey R O'Connell; Braxton D Mitchell; Kristi D Silver
Journal:  Diabetes Metab Res Rev       Date:  2009-11       Impact factor: 4.876

6.  West African and Amerindian ancestry and risk of myocardial infarction and metabolic syndrome in the Central Valley population of Costa Rica.

Authors:  Edward A Ruiz-Narváez; Lance Bare; Andre Arellano; Joseph Catanese; Hannia Campos
Journal:  Hum Genet       Date:  2010-03-06       Impact factor: 4.132

7.  Linkage disequilibrium in European elite maize germplasm investigated with SSRs.

Authors:  Benjamin Stich; Albrecht E Melchinger; Matthias Frisch; Hans P Maurer; Martin Heckenberger; Jochen C Reif
Journal:  Theor Appl Genet       Date:  2005-07-05       Impact factor: 5.699

Review 8.  Linkage disequilibrium in humans: models and data.

Authors:  J K Pritchard; M Przeworski
Journal:  Am J Hum Genet       Date:  2001-06-14       Impact factor: 11.025

9.  Significant linkage to airway responsiveness on chromosome 12q24 in families of children with asthma in Costa Rica.

Authors:  Juan C Celedón; Manuel E Soto-Quiros; Lydiana Avila; Stephen L Lake; Catherine Liang; Eduardo Fournier; Mitzi Spesny; Craig P Hersh; Jody S Sylvia; Thomas J Hudson; Andrei Verner; Barbara J Klanderman; Nelson B Freimer; Edwin K Silverman; Scott T Weiss
Journal:  Hum Genet       Date:  2006-09-26       Impact factor: 4.132

Review 10.  Autism: in search of susceptibility genes.

Authors:  Janine A Lamb; Jeremy R Parr; Anthony J Bailey; Anthony P Monaco
Journal:  Neuromolecular Med       Date:  2002       Impact factor: 3.843

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