Literature DB >> 11171313

ATP analogues at a glance.

C Bagshaw1.   

Abstract

ATP has long been known to play a central role in the energetics of cells both in transduction mechanisms and in metabolic pathways, and is involved in regulation of enzyme, channel and receptor activities. Numerous ATP analogues have been synthesised to probe the role of ATP in biosystems (Yount, 1975; Jameson and Eccleston, 1997; Bagshaw, 1998). In general, two contrasting strategies are employed. Modifications may be introduced deliberately to change the properties of ATP (e.g. making it non-hydrolysable) so as to perturb the chemical steps involved in its action. Typically these involve modification of the phosphate chain. Alternatively, derivatives (e.g. fluorescent probes) are designed to report on the action of ATP but have a minimal effect on its properties. ATP-utilising systems vary enormously in their specificity; so what acts as a good analogue in one case may be very poor in another. The accompanying poster shows a representative selection of derivatives that have been synthesised and summarises their key properties.

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Year:  2001        PMID: 11171313     DOI: 10.1242/jcs.114.3.459

Source DB:  PubMed          Journal:  J Cell Sci        ISSN: 0021-9533            Impact factor:   5.285


  15 in total

1.  Evaluating the efficacy of tryptophan fluorescence and absorbance as a selection tool for identifying protein crystals.

Authors:  Harindarpal S Gill
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-02-27

2.  ELTA: Enzymatic Labeling of Terminal ADP-Ribose.

Authors:  Yoshinari Ando; Elad Elkayam; Robert Lyle McPherson; Morgan Dasovich; Shang-Jung Cheng; Jim Voorneveld; Dmitri V Filippov; Shao-En Ong; Leemor Joshua-Tor; Anthony K L Leung
Journal:  Mol Cell       Date:  2019-01-31       Impact factor: 17.970

3.  Crystal structure of human vaccinia-related kinase 1 in complex with AMP-PNP, a non-hydrolyzable ATP analog.

Authors:  Yeen Shian Ngow; Sreekanth Rajan; Hong Ye; Ho Sup Yoon
Journal:  Protein Sci       Date:  2018-12-20       Impact factor: 6.725

4.  Regulation of the human Suv3 helicase on DNA by inorganic cofactors.

Authors:  Susanne T Venø; Marie B Witt; Tomasz Kulikowicz; Vilhelm A Bohr; Tinna Stevnsner
Journal:  Biochimie       Date:  2014-11-21       Impact factor: 4.079

5.  Structural insights into RNA recognition by the Chikungunya virus nsP2 helicase.

Authors:  Yee-Song Law; Age Utt; Yaw Bia Tan; Jie Zheng; Sainan Wang; Ming Wei Chen; Patrick R Griffin; Andres Merits; Dahai Luo
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-18       Impact factor: 11.205

6.  Synthesis and evaluation of fluorescent cap analogues for mRNA labelling.

Authors:  Marcin Ziemniak; Mariusz Szabelski; Maciej Lukaszewicz; Anna Nowicka; Edward Darzynkiewicz; Robert E Rhoads; Zbigniew Wieczorek; Jacek Jemielity
Journal:  RSC Adv       Date:  2013       Impact factor: 3.361

7.  Probing adenosine nucleotide-binding proteins with an affinity-labeled nucleotide probe and mass spectrometry.

Authors:  Haibo Qiu; Yinsheng Wang
Journal:  Anal Chem       Date:  2007-06-30       Impact factor: 6.986

8.  Use of stopped-flow fluorescence and labeled nucleotides to analyze the ATP turnover cycle of kinesins.

Authors:  Jennifer T Patel; Hannah R Belsham; Alexandra J Rathbone; Claire T Friel
Journal:  J Vis Exp       Date:  2014-10-17       Impact factor: 1.355

9.  Combined roles of ATP and small hairpin RNA in the activation of RIG-I revealed by solution-based analysis.

Authors:  Neelam Shah; Simone A Beckham; Jacqueline A Wilce; Matthew C J Wilce
Journal:  Nucleic Acids Res       Date:  2018-04-06       Impact factor: 16.971

10.  The conformational changes coupling ATP hydrolysis and translocation in a bacterial DnaB helicase.

Authors:  Thomas Wiegand; Riccardo Cadalbert; Denis Lacabanne; Joanna Timmins; Laurent Terradot; Anja Böckmann; Beat H Meier
Journal:  Nat Commun       Date:  2019-01-03       Impact factor: 14.919

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