Literature DB >> 11170213

Entropy calculations on a reversibly folding peptide: changes in solute free energy cannot explain folding behavior.

H Schäfer1, X Daura, A E Mark, W F van Gunsteren.   

Abstract

The configurational entropy of a beta-heptapeptide in solution at four different temperatures is calculated. The contributions of the backbone and of the side-chain atoms to the total peptide entropy are analyzed separately and the effective contribution to the entropy arising from correlations between these terms determined. The correlation between the backbone and side-chain atoms amounts to about 17% and is rather insensitive to the temperature. The correlation of motion within the backbone and within side-chains is much larger and decreases with temperature. As the peptide reversibly folds at higher temperatures, its change in entropy and enthalpy upon folding is analyzed. The change in entropy and enthalpy upon folding of the peptide alone cannot account for the observed change in free energy on folding of the peptide in solution. Enthalpic and entropic contributions of the solvent thus also play a key role. Proteins 2001;43:45-56. Copyright 2001 Wiley-Liss, Inc.

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Year:  2001        PMID: 11170213     DOI: 10.1002/1097-0134(20010401)43:1<45::aid-prot1016>3.0.co;2-n

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  23 in total

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Review 10.  Methods for calculating the entropy and free energy and their application to problems involving protein flexibility and ligand binding.

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