Literature DB >> 11169389

Effects of amino acids and chirality for molecular folding of desoxazoline-ascidiacyclamide derivatives: X-ray crystal structures of four cyclic octapeptides including unusual amino acids, cyclo(-Ile-aThr-D-Val-Thz-)(2), cyclo(-Ala-aThr-D-Val-Thz-Ile-aThr-D-Val-Thz-), cyclo(-Val-aThr-D-Val-Thz-Ile-aThr-D-Val-Thz-), and cyclo(-Ile-aThr-Val-Thz-Ile-aThr-D-Val-Thz-).

A Asano1, M Doi, K Kobayashi, M Arimoto, T Ishida, Y Katsuya, Y Mezaki, H Hasegawa, M Nakai, M Sasaki, T Taniguchi, A Terashima.   

Abstract

Desoxazoline derivative of ascidiacyclamide (1), cyclo(-L-Ile-L-allo-threonine-D-Val-thiazole-)(2), was modified to disturb the C(2)-symmetry. An Ile(1) residue of 1 was replaced for Ala (2) or Val (3), and the D-Val(3) residue was replaced for Val (4). The crystal structures of 1-4 were analyzed by x-ray diffraction methods. The molecules of all compounds were folded and this type of structure was not observed in x-ray structures of ascidiacyclamide derivatives so far except for patellamide D. The folding patterns of 1-4 were similar to each other and resembled that of patellamide. The asymmetric modifications at position 1 caused the conformational changes at local area, and these were related with the peptide-peptide and peptide-solvent interactions. Despite the diverse backbone conformation by the epimeric modification at position 3, the entire molecule of 4 was folded. These results mean that (1) the desoxazoline-ascidiacyclamides favored the folded structures and (2) the modifications of the side chain size at position 1 and the chirality at position 3 brought the local conformational changes to derivatives, suggesting that (3) the lack of the oxazoline block leads to conformational flexibility of 1-4, which accepts the conformational change with no drastic change on the entire structure. Copyright 2001 John Wiley & Sons, Inc.

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Year:  2001        PMID: 11169389     DOI: 10.1002/1097-0282(200103)58:3<295::AID-BIP1006>3.0.CO;2-X

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  2 in total

1.  The desoxazoline asidiacyclamide analogue cyclo(Gly-Thr-D-Val-Thz-Ile-Thr-D-Val-Thz) acetonitrile monosolvate.

Authors:  Akiko Asano; Mitsunobu Doi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-10

2.  NMR-based quantitative studies of the conformational equilibrium between their square and folded forms of ascidiacyclamide and its analogues.

Authors:  Akiko Asano; Katsuhiko Minoura; Yuki Kojima; Taishi Yoshii; Ryoya Ito; Takeshi Yamada; Takuma Kato; Mitsunobu Doi
Journal:  RSC Adv       Date:  2020-09-09       Impact factor: 4.036

  2 in total

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