Literature DB >> 11166647

Computational methods for protein function analysis.

M Pellegrini1.   

Abstract

Two recent advances have had the greatest impact on protein function analysis so far: the complete sequences of genomes and mRNA expression level profiles. The former has spurred the development of novel techniques to study protein function: phylogenetic profiles and gene clusters. The latter has introduced a method, not based on sequence homology, that enables one to group together functionally related genes.

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Year:  2001        PMID： 11166647     DOI： 10.1016/s1367-5931(00)00165-4

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN： 1367-5931            Impact factor:   8.822


  8 in total

1.  Comparative analysis of chloroplast genomes: functional annotation, genome-based phylogeny, and deduced evolutionary patterns.

Authors:  Javier De Las Rivas; Juan Jose Lozano; Angel R Ortiz
Journal:  Genome Res       Date:  2002-04       Impact factor: 9.043

2.  SVM-Prot: Web-based support vector machine software for functional classification of a protein from its primary sequence.

Authors:  C Z Cai; L Y Han; Z L Ji; X Chen; Y Z Chen
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

3.  Nearest-neighbor classifier as a tool for classification of protein families.

Authors:  Mona Chaurasiya; Gohel Bakul Chandulah; Krishna Misra; Vivek Kumar Chaurasiya
Journal:  Bioinformation       Date:  2010-03-31

4.  Identification of drought responsive proteins using gene ontology hierarchy.

Authors:  Vinay Sharma; Manoj Kumar Sekhwal; Ajit Kumar Swami; Renu Sarin
Journal:  Bioinformation       Date:  2012-07-06

5.  Comparative analyses of fundamental differences in membrane transport capabilities in prokaryotes and eukaryotes.

Authors:  Qinghu Ren; Ian T Paulsen
Journal:  PLoS Comput Biol       Date:  2005-08-19       Impact factor: 4.475

6.  Protemot: prediction of protein binding sites with automatically extracted geometrical templates.

Authors:  Darby Tien-Hao Chang; Yi-Zhong Weng; Jung-Hsin Lin; Ming-Jing Hwang; Yen-Jen Oyang
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

7.  On the detection of functionally coherent groups of protein domains with an extension to protein annotation.

Authors:  William A McLaughlin; Ken Chen; Tingjun Hou; Wei Wang
Journal:  BMC Bioinformatics       Date:  2007-10-16       Impact factor: 3.169

8.  Prolinks: a database of protein functional linkages derived from coevolution.

Authors:  Peter M Bowers; Matteo Pellegrini; Mike J Thompson; Joe Fierro; Todd O Yeates; David Eisenberg
Journal:  Genome Biol       Date:  2004-04-16       Impact factor: 13.583
  8 in total

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